Search result

BaseInfo

ncRNA ID	osa-miR2907b
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:7278025-7278089 [+]
Reference genome	MSU7
Source	miRBase
Length	22
Mature sequence(if miRNA)	36 - GGCAGCCGAGCGAGGGCCUCGG - 57
Stem-loop(if miRNA)	ACCUC    UCC    --       CA  A GAGC     UCCC   GCCC  GCUCGGC  CC C ||||     ||||   ||||  |||||||  || CUCG     GGGG   CGGG  CGAGCCG  GG G     ---AC    CUC    AG       AC  U
Stem-loop sequence	GAGCACCUCUCCCUCCGCCCGCUCGGCCACCACGUGGCAGCCGAGCGAGGGCCUCGGGGCAGCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015756064.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4642   CCGAGGCCCUCGCUCGGCCGCC   4663 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X11, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756076.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4527   CCGAGGCCCUCGCUCGGCCGCC   4548 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X22, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756056.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4635   CCGAGGCCCUCGCUCGGCCGCC   4656 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X4, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756098.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4527   CCGAGGCCCUCGCUCGGCCGCC   4548 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X42, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756091.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4527   CCGAGGCCCUCGCUCGGCCGCC   4548 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X36, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756083.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4527   CCGAGGCCCUCGCUCGGCCGCC   4548 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X29, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756057.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4527   CCGAGGCCCUCGCUCGGCCGCC   4548 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X5, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756078.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4527   CCGAGGCCCUCGCUCGGCCGCC   4548 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X24, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756079.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4527   CCGAGGCCCUCGCUCGGCCGCC   4548 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X25, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756099.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4527   CCGAGGCCCUCGCUCGGCCGCC   4548 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X43, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756060.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4534   CCGAGGCCCUCGCUCGGCCGCC   4555 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X7, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756053.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4527   CCGAGGCCCUCGCUCGGCCGCC   4548 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X1, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756058.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4527   CCGAGGCCCUCGCUCGGCCGCC   4548 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X6, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756054.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4527   CCGAGGCCCUCGCUCGGCCGCC   4548 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X2, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756095.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4527   CCGAGGCCCUCGCUCGGCCGCC   4548 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X40, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756088.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4527   CCGAGGCCCUCGCUCGGCCGCC   4548 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X33, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756096.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4527   CCGAGGCCCUCGCUCGGCCGCC   4548 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X41, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756102.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4463   CCGAGGCCCUCGCUCGGCCGCC   4484 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X46, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756069.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4457   CCGAGGCCCUCGCUCGGCCGCC   4478 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X16, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756061.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4450   CCGAGGCCCUCGCUCGGCCGCC   4471 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X8, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756062.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4527   CCGAGGCCCUCGCUCGGCCGCC   4548 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X9, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756063.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4438   CCGAGGCCCUCGCUCGGCCGCC   4459 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X10, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756100.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4527   CCGAGGCCCUCGCUCGGCCGCC   4548 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X44, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756067.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4527   CCGAGGCCCUCGCUCGGCCGCC   4548 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X14, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756101.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4527   CCGAGGCCCUCGCUCGGCCGCC   4548 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X45, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756090.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4527   CCGAGGCCCUCGCUCGGCCGCC   4548 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X35, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756065.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4527   CCGAGGCCCUCGCUCGGCCGCC   4548 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X12, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756055.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4527   CCGAGGCCCUCGCUCGGCCGCC   4548 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X3, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756070.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4368   CCGAGGCCCUCGCUCGGCCGCC   4389 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X17, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756068.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4527   CCGAGGCCCUCGCUCGGCCGCC   4548 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X15, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756066.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4361   CCGAGGCCCUCGCUCGGCCGCC   4382 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X13, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756094.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4527   CCGAGGCCCUCGCUCGGCCGCC   4548 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X39, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756093.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4527   CCGAGGCCCUCGCUCGGCCGCC   4548 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X38, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756092.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4527   CCGAGGCCCUCGCUCGGCCGCC   4548 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X37, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756073.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4527   CCGAGGCCCUCGCUCGGCCGCC   4548 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X20, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756077.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4229   CCGAGGCCCUCGCUCGGCCGCC   4250 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X23, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756074.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4527   CCGAGGCCCUCGCUCGGCCGCC   4548 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X21, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
XM_015756080.1	ncRNA:22   GGCUCCGGGAGCGAGCCGACGG   1   ||||||||||||||||||*||| targets:4527   CCGAGGCCCUCGCUCGGCCGCC   4548 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4347149), transcript variant X26, mRNA	putative protease Do-like 14(LOC4347149)	coding protein	psRNATarget
AK110409.1	ncRNA:22   GGCUCCGGGAGCGAGC-CGACGG   1   =|*|||||||||||||-|||||| targets:327   UCAAGGCCCUCGCUCGUGCUGCC   349 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-165-G10, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:19796675 "Identification of novel stress-regulated microRNAs from Oryza sativa L"; Jian X, Zhang L, Li G, Zhang L, Wang X, Cao X, Fang X, Chen F; Genomics. 95:47-55(2010).