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BaseInfo

ncRNA ID ath-miR170n
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 21
Mature sequence(if miRNA) NA - UGAUUGAGCCGCGCCAAUAUC - NA
Stem-loop(if miRNA) AGAUCCUUAA     AU    AAA    GAU    ----CGG   GAUUAAACGGUGGUGAUGAUUCUUUGUGGAUGAGUGAGAGGAGAG
          GCGCG  UCGG   AUCA   UCUC       CGU                                             C
          |||||  ||||   ||||   ||||       |||                                             U
          CGCGC  AGUU   UGGU   AGAG       CAU                                             U
---CUAUAAC     CG    -AG    ---    UUGUGAU   CAUUGGUGUUCAGAGGCAAAGUCUCUCGUCGAAGAGUGUAGCGAC
Stem-loop sequence AGAUCCUUAAGCGCGAUUCGGAAAAUCAGAUUCUCCGGCGUGAUUAAACGGUGGUGAUGAUUCUUUGUGGAUGAGUGAGAGGAGAGCUUCAGCGAUGUGAGAAGCUGCUCUCUGAAACGGAGACUUGUGGUUACUACUAGUGUUGAGAUGGUGAUUGAGCCGCGCCAAUAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AF036303.1
ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1
  |||||||||||||||||||||
targets:135   GAUAUUGGCGCGGCUCAAUCA   155

0.0 Arabidopsis thaliana scarecrow-like 6 (SCL6) mRNA, partial cds NA coding protein psRNATarget
BX820692.1
ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1
  |||||||||||||||||||||
targets:301   GAUAUUGGCGCGGCUCAAUCA   321

0.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH60ZB03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY133537.1
ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1
  |||||||||||||||||||||
targets:675   GAUAUUGGCGCGGCUCAAUCA   695

0.0 Arabidopsis thaliana At4g00150/F6N15_20 mRNA, complete cds NA coding protein psRNATarget
BX826491.1
ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1
  |||||||||||||||||||||
targets:661   GAUAUUGGCGCGGCUCAAUCA   681

0.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB30ZC05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX827001.1
ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1
  |||||||||||||||||||||
targets:642   GAUAUUGGCGCGGCUCAAUCA   662

0.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB85ZC09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX826648.1
ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1
  |||||||||||||||||||||
targets:737   GAUAUUGGCGCGGCUCAAUCA   757

0.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB50ZC05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY096372.1
ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1
  |||||||||||||||||||||
targets:804   GAUAUUGGCGCGGCUCAAUCA   824

0.0 Arabidopsis thaliana putative scarecrow protein (At3g60630) mRNA, complete cds NA coding protein psRNATarget
BT053760.1
ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1
  |||||||||||||||||||||
targets:885   GAUAUUGGCGCGGCUCAAUCA   905

0.0 Arabidopsis thaliana unknown protein (At2g45160) mRNA, complete cds NA coding protein psRNATarget
BT020591.1
ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1
  |||||||||||||||||||||
targets:904   GAUAUUGGCGCGGCUCAAUCA   924

0.0 Arabidopsis thaliana At2g45160 gene, complete cds NA coding protein psRNATarget
AF462831.1
ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1
  |||||||||||||||||||||
targets:758   GAUAUUGGCGCGGCUCAAUCA   778

0.0 Arabidopsis thaliana AT4g00150/F6N15_20 mRNA, complete cds NA coding protein psRNATarget
BX819093.1
ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1
  |||||||||||||||||||||
targets:936   GAUAUUGGCGCGGCUCAAUCA   956

0.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB45ZE06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY064062.1
ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1
  |||||||||||||||||||||
targets:946   GAUAUUGGCGCGGCUCAAUCA   966

0.0 Arabidopsis thaliana putative scarecrow protein (At3g60630) mRNA, complete cds NA coding protein psRNATarget
BX823015.1
ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1
  |||||||||||||||||||||
targets:1044   GAUAUUGGCGCGGCUCAAUCA   1064

0.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB80ZC11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BT004053.1
ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1
  |||||||||||||||||||||
targets:1003   GAUAUUGGCGCGGCUCAAUCA   1023

0.0 Arabidopsis thaliana clone RAFL15-13-A09 (R20463) putative SCARECROW gene regulator (At2g45160) mRNA, complete cds NA coding protein psRNATarget
NM_116232.5
ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1
  |||||||||||||||||||||
targets:1065   GAUAUUGGCGCGGCUCAAUCA   1085

0.0 Arabidopsis thaliana GRAS family transcription factor (HAM3), mRNA GRAS family transcription factor(HAM3) coding protein psRNATarget
NM_115927.5
ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1
  |||||||||||||||||||||
targets:1100   GAUAUUGGCGCGGCUCAAUCA   1120

0.0 Arabidopsis thaliana GRAS family transcription factor (HAM2), mRNA GRAS family transcription factor(HAM2) coding protein psRNATarget
NM_130079.3
ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1
  |||||||||||||||||||||
targets:1304   GAUAUUGGCGCGGCUCAAUCA   1324

0.0 Arabidopsis thaliana GRAS family transcription factor (HAM1), mRNA GRAS family transcription factor(HAM1) coding protein psRNATarget
BX820366.1
ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1
  ||||||*||||||||||||||
targets:926   GAUAUUUGCGCGGCUCAAUCA   946

1.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH26ZE02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
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