| ncRNA ID | osa-miR5534b |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr11:6404422-6404519 [-] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 69 - CGAUGACAACAGCUAGAAUGG - 89 |
| Stem-loop(if miRNA) |
A ---- UG C GG A A A ACUUUG UUCGA ACAACAGCUAGAAUGGC GC CG CGG GG U |||||| ||||| ||||||||||||||||| || || ||| || U UGAAAU GAGCU UGUUGUCGAUCUUACCG CG GU GCC CC G - CGCA GU C GA A C U |
| Stem-loop sequence | AACUUUGUUCGAUGACAACAGCUAGAAUGGCCGCGGCGACGGAGGAUUGUCCCCCGAUGAGGCCGCCAUUCUAGCUGUUGUUGUCGAGACGCUAAAGU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_015763641.1 |
|
3.0 | PREDICTED: Oryza sativa Japonica Group cytochrome P450 94B3-like (LOC107279619), mRNA | cytochrome P450 94B3-like(LOC107279619) | coding protein | psRNATarget | |||||||||
| XM_015760613.1 |
|
3.0 | PREDICTED: Oryza sativa Japonica Group cytochrome P450 94B3-like (LOC107279326), mRNA | cytochrome P450 94B3-like(LOC107279326) | coding protein | psRNATarget | |||||||||
| XM_015775159.1 |
|
3.0 | PREDICTED: Oryza sativa Japonica Group bromodomain and WD repeat-containing protein 1 (LOC9268022), transcript variant X1, mRNA | bromodomain and WD repeat-containing protein 1(LOC9268022) | coding protein | psRNATarget | |||||||||
| XM_015775160.1 |
|
3.0 | PREDICTED: Oryza sativa Japonica Group bromodomain and WD repeat-containing protein 1 (LOC9268022), transcript variant X2, mRNA | bromodomain and WD repeat-containing protein 1(LOC9268022) | coding protein | psRNATarget |
| 1 | PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011). |