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BaseInfo

ncRNA ID osa-miR5534a
Species Oryza sativa
Class miRNA
Genome position Chr11:6404295-6404396 [-]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 69 - UGACGACAACAGCUAGAAUGG - 89
Stem-loop(if miRNA) A                                  C  GG  A  AA  A
 ACUUUAGCGCCUUGACGACAACAGCUAGAAUGGU GC  CG CG  GG U
 |||||||||||||||||||||||||||||||||| ||  || ||  || U
 UGAAAUCGCGGAGCUGCUGUUGUCGAUCUUACCG CG  GU GC  CC G
-                                  C  GA  A  CC  U
Stem-loop sequence AACUUUAGCGCCUUGACGACAACAGCUAGAAUGGUCGCGGCGACGAAGGAUUGUCCCCCGAUGAGGCCGCCAUUCUAGCUGUUGUCGUCGAGGCGCUAAAGU

Reference

1 PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa";
Wei LQ, Yan LF, Wang T;
Genome Biol. 12:R53(2011).