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BaseInfo

ncRNA ID	osa-miR169n
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:6085252-6085428 [-]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	147 - UAGCCAAGAAUGACUUGCCUA - 167
Stem-loop(if miRNA)	CU  -       -         U    U        GUUUU   U   GUUG  U        CAUCU   A      GCAGAUUUGCAGUGGCA   CC CUUUGGU AGCCAAGAA GACU GCCUAUGU     GCC UGU    GC CAUCCAUC     AUC GCCGUU                 G   || ||||||| ||||||||| |||| ||||||||     ||| |||    || ||||||||     ||| ||||||   GG GAGACCG UCGGUUCUU CUGG CGGGUACG     CGG GUA    CG GUAGGUAG     UUC UUAAAG                 A -C  U       A         -    C        ----U   U   ---A  U        ---UG   -      AAAGACUUUGGGAAAUU
Stem-loop sequence	CUCCCUUUGGUAGCCAAGAAUGACUUGCCUAUGUGUUUUGCCUUGUGUUGGCUCAUCCAUCCAUCUAUCAGCCGUUGCAGAUUUGCAGUGGCAGAUUAAAGGGUUUCAGAAAGAAAUUCUUGUGAUGGAUGUGCAAUGUGGCUGCAUGGGCCGGUCUUCUUGGCUAGCCAGAGUGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AB288032.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   |||||||*||||||||||||= targets:1047   UAGGCAACUCAUUCUUGGCUG   1067 Target Full Sequence	2.0	Oryza sativa Japonica Group OsHAP2F mRNA for HAP2 subunit of HAP complex, complete cds	NA	coding protein	psRNATarget
AK073742.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   |||||||*||||||||||||= targets:1178   UAGGCAACUCAUUCUUGGCUG   1198 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033067G24, full insert sequence	NA	coding protein	psRNATarget
XM_015762963.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   |||||||*||||||||||||= targets:1258   UAGGCAACUCAUUCUUGGCUG   1278 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-10 (LOC4352811), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-10(LOC4352811)	coding protein	psRNATarget
XM_015762964.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   |||||||*||||||||||||= targets:1405   UAGGCAACUCAUUCUUGGCUG   1425 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-10 (LOC4352811), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-10(LOC4352811)	coding protein	psRNATarget
AB288034.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   |||||||*||||||||||||* targets:1139   UAGGCAAAUCAUUCUUGGCUC   1159 Target Full Sequence	2.0	Oryza sativa Japonica Group OsHAP2H mRNA for HAP2 subunit of HAP complex, complete cds	NA	coding protein	psRNATarget
AK106398.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   |||||||*||||||||||||* targets:1718   UAGGCAAAUCAUUCUUGGCUC   1738 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-102-F12, full insert sequence	NA	coding protein	psRNATarget
XM_015772628.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   |||||||*||||||||||||* targets:1713   UAGGCAAAUCAUUCUUGGCUC   1733 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-10 (LOC4333575), mRNA	nuclear transcription factor Y subunit A-10(LOC4333575)	coding protein	psRNATarget
AK099549.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   *||||||*||||||||||||* targets:459   CAGGCAAUUCAUUCUUGGCUU   479 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013033E22, full insert sequence	NA	coding protein	psRNATarget
EU847012.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   *||||||*||||||||||||* targets:1099   CAGGCAAUUCAUUCUUGGCUU   1119 Target Full Sequence	2.0	Oryza sativa Japonica Group clone KCS256D08 CCAAT-binding transcription factor mRNA, complete cds	NA	coding protein	psRNATarget
AB288030.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   *||||||*||||||||||||* targets:1011   CAGGCAAUUCAUUCUUGGCUU   1031 Target Full Sequence	2.0	Oryza sativa Japonica Group OsHAP2D mRNA for HAP2 subunit of HAP complex, complete cds	NA	coding protein	psRNATarget
XM_015777148.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   *||||||*||||||||||||* targets:1286   CAGGCAAUUCAUUCUUGGCUU   1306 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-9 (LOC4333806), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-9(LOC4333806)	coding protein	psRNATarget
XM_015777151.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   *||||||*||||||||||||* targets:1540   CAGGCAAUUCAUUCUUGGCUU   1560 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-9 (LOC4333806), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-9(LOC4333806)	coding protein	psRNATarget
XM_015777150.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   *||||||*||||||||||||* targets:1636   CAGGCAAUUCAUUCUUGGCUU   1656 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-9 (LOC4333806), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-9(LOC4333806)	coding protein	psRNATarget
AK069854.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   *||||||*||||||||||||* targets:1637   CAGGCAAUUCAUUCUUGGCUU   1657 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023036P10, full insert sequence	NA	coding protein	psRNATarget
XM_015777149.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   *||||||*||||||||||||* targets:1744   CAGGCAAUUCAUUCUUGGCUU   1764 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-9 (LOC4333806), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-9(LOC4333806)	coding protein	psRNATarget
XM_015777152.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   *||||||*||||||||||||* targets:1900   CAGGCAAUUCAUUCUUGGCUU   1920 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-9 (LOC4333806), transcript variant X5, mRNA	nuclear transcription factor Y subunit A-9(LOC4333806)	coding protein	psRNATarget
AK106783.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   |=*|||**||||||||||||| targets:1200   UGCGCACAUCAUUCUUGGCUA   1220 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-115-H09, full insert sequence	NA	coding protein	psRNATarget
XM_015781844.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   |=*|||**||||||||||||| targets:1199   UGCGCACAUCAUUCUUGGCUA   1219 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339100 (LOC4339100), mRNA	uncharacterized LOC4339100(LOC4339100)	coding protein	psRNATarget

Reference

1	PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004).