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BaseInfo

ncRNA ID	osa-miR169o
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:6081528-6081700 [-]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	143 - UAGCCAAGAAUGACUUGCCUA - 163
Stem-loop(if miRNA)	CU  -       -         U    U     C  UUUU   C  UGUUG  U     -   C    AU      GCCAUGGCAGAUGGCA   CC CUUUGGU AGCCAAGAA GACU GCCUA GC    GCC UC     GC CAUCC AUC GUCU  CUAUCU                G   || ||||||| ||||||||| |||| ||||| ||    ||| ||     || ||||| ||| ||||  ||||||   GG GAGACCG UCGGUUCUU CUGG CGGGU CG    CGG AG     CG GUAGG UAG GUUC  UUAAAG                A -C  U       A         -    C     A  ---U   -  --UAA  U     A   U    --      AAAGUCUUUGGGAAUU
Stem-loop sequence	CUCCCUUUGGUAGCCAAGAAUGACUUGCCUACGCUUUUGCCCUCUGUUGGCUCAUCCAUCCGUCUAUCUAUCUGCCAUGGCAGAUGGCAGAUUAAGGGUUUCUGAAAGAAAUUCUUGUGAUAGGAUGUGCAAUGAGGCUGCAUGGGCCGGUCUUCUUGGCUAGCCAGAGUGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AB288032.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   |||||||*||||||||||||= targets:1047   UAGGCAACUCAUUCUUGGCUG   1067 Target Full Sequence	2.0	Oryza sativa Japonica Group OsHAP2F mRNA for HAP2 subunit of HAP complex, complete cds	NA	coding protein	psRNATarget
AK073742.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   |||||||*||||||||||||= targets:1178   UAGGCAACUCAUUCUUGGCUG   1198 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033067G24, full insert sequence	NA	coding protein	psRNATarget
XM_015762963.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   |||||||*||||||||||||= targets:1258   UAGGCAACUCAUUCUUGGCUG   1278 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-10 (LOC4352811), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-10(LOC4352811)	coding protein	psRNATarget
XM_015762964.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   |||||||*||||||||||||= targets:1405   UAGGCAACUCAUUCUUGGCUG   1425 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-10 (LOC4352811), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-10(LOC4352811)	coding protein	psRNATarget
AB288034.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   |||||||*||||||||||||* targets:1139   UAGGCAAAUCAUUCUUGGCUC   1159 Target Full Sequence	2.0	Oryza sativa Japonica Group OsHAP2H mRNA for HAP2 subunit of HAP complex, complete cds	NA	coding protein	psRNATarget
AK106398.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   |||||||*||||||||||||* targets:1718   UAGGCAAAUCAUUCUUGGCUC   1738 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-102-F12, full insert sequence	NA	coding protein	psRNATarget
XM_015772628.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   |||||||*||||||||||||* targets:1713   UAGGCAAAUCAUUCUUGGCUC   1733 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-10 (LOC4333575), mRNA	nuclear transcription factor Y subunit A-10(LOC4333575)	coding protein	psRNATarget
AK099549.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   *||||||*||||||||||||* targets:459   CAGGCAAUUCAUUCUUGGCUU   479 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013033E22, full insert sequence	NA	coding protein	psRNATarget
EU847012.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   *||||||*||||||||||||* targets:1099   CAGGCAAUUCAUUCUUGGCUU   1119 Target Full Sequence	2.0	Oryza sativa Japonica Group clone KCS256D08 CCAAT-binding transcription factor mRNA, complete cds	NA	coding protein	psRNATarget
AB288030.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   *||||||*||||||||||||* targets:1011   CAGGCAAUUCAUUCUUGGCUU   1031 Target Full Sequence	2.0	Oryza sativa Japonica Group OsHAP2D mRNA for HAP2 subunit of HAP complex, complete cds	NA	coding protein	psRNATarget
XM_015777148.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   *||||||*||||||||||||* targets:1286   CAGGCAAUUCAUUCUUGGCUU   1306 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-9 (LOC4333806), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-9(LOC4333806)	coding protein	psRNATarget
XM_015777151.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   *||||||*||||||||||||* targets:1540   CAGGCAAUUCAUUCUUGGCUU   1560 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-9 (LOC4333806), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-9(LOC4333806)	coding protein	psRNATarget
XM_015777150.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   *||||||*||||||||||||* targets:1636   CAGGCAAUUCAUUCUUGGCUU   1656 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-9 (LOC4333806), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-9(LOC4333806)	coding protein	psRNATarget
AK069854.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   *||||||*||||||||||||* targets:1637   CAGGCAAUUCAUUCUUGGCUU   1657 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023036P10, full insert sequence	NA	coding protein	psRNATarget
XM_015777149.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   *||||||*||||||||||||* targets:1744   CAGGCAAUUCAUUCUUGGCUU   1764 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-9 (LOC4333806), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-9(LOC4333806)	coding protein	psRNATarget
XM_015777152.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   *||||||*||||||||||||* targets:1900   CAGGCAAUUCAUUCUUGGCUU   1920 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-9 (LOC4333806), transcript variant X5, mRNA	nuclear transcription factor Y subunit A-9(LOC4333806)	coding protein	psRNATarget
AK106783.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   |=*|||**||||||||||||| targets:1200   UGCGCACAUCAUUCUUGGCUA   1220 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-115-H09, full insert sequence	NA	coding protein	psRNATarget
XM_015781844.1	ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1   |=*|||**||||||||||||| targets:1199   UGCGCACAUCAUUCUUGGCUA   1219 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339100 (LOC4339100), mRNA	uncharacterized LOC4339100(LOC4339100)	coding protein	psRNATarget

Reference

1	PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004).