ncRNA ID | osa-miR1857-3p |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr11:2733902-2734031 [+] |
Reference genome | MSU7 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 100 - UCAUGCUCCAAGAAAACCAGG - 120 |
Stem-loop(if miRNA) |
--G                                       A      ---------CCG     AAA    UUUUUAUCCUGGUUUUUUUGGAGCAUGAGGUUAUCUCUC GUUUUU            UGUCC   A    ||||||||||||||||||||||||||||||||||||||| ||||||            |||||   U    AAAAAUAGGACCAAAAGAACCUCGUACUCCAAUAGAGAG CAAAAG            ACAGG   A UUA                                       C      UUCUUGUCAAAA     AAA |
Stem-loop sequence | GUUUUUAUCCUGGUUUUUUUGGAGCAUGAGGUUAUCUCUCAGUUUUUCCGUGUCCAAAAUAAAAGGACAAAAACUGUUCUUGAAAACCGAGAGAUAACCUCAUGCUCCAAGAAAACCAGGAUAAAAAAUU |
1 | PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"; Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C; Genome Res. 18:1456-1465(2008). |
2 | PMID:19903869
"Rice MicroRNA effector complexes and targets"; Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y; Plant Cell. 21:3421-3435(2009). |