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BaseInfo

ncRNA ID osa-miR1857-3p
Species Oryza sativa
Class miRNA
Genome position Chr11:2733902-2734031 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 100 - UCAUGCUCCAAGAAAACCAGG - 120
Stem-loop(if miRNA) --G                                       A      ---------CCG     AAA
   UUUUUAUCCUGGUUUUUUUGGAGCAUGAGGUUAUCUCUC GUUUUU            UGUCC   A
   ||||||||||||||||||||||||||||||||||||||| ||||||            |||||   U
   AAAAAUAGGACCAAAAGAACCUCGUACUCCAAUAGAGAG CAAAAG            ACAGG   A
UUA                                       C      UUCUUGUCAAAA     AAA
Stem-loop sequence GUUUUUAUCCUGGUUUUUUUGGAGCAUGAGGUUAUCUCUCAGUUUUUCCGUGUCCAAAAUAAAAGGACAAAAACUGUUCUUGAAAACCGAGAGAUAACCUCAUGCUCCAAGAAAACCAGGAUAAAAAAUU

Reference

1 PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains";
Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C;
Genome Res. 18:1456-1465(2008).
2 PMID:19903869
"Rice MicroRNA effector complexes and targets";
Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y;
Plant Cell. 21:3421-3435(2009).