Search result

BaseInfo

ncRNA ID osa-miR1857-5p
Species Oryza sativa
Class miRNA
Genome position Chr11:2733902-2734031 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - UGGUUUUUUUGGAGCAUGAGG - 31
Stem-loop(if miRNA) --G                                       A      ---------CCG     AAA
   UUUUUAUCCUGGUUUUUUUGGAGCAUGAGGUUAUCUCUC GUUUUU            UGUCC   A
   ||||||||||||||||||||||||||||||||||||||| ||||||            |||||   U
   AAAAAUAGGACCAAAAGAACCUCGUACUCCAAUAGAGAG CAAAAG            ACAGG   A
UUA                                       C      UUCUUGUCAAAA     AAA
Stem-loop sequence GUUUUUAUCCUGGUUUUUUUGGAGCAUGAGGUUAUCUCUCAGUUUUUCCGUGUCCAAAAUAAAAGGACAAAAACUGUUCUUGAAAACCGAGAGAUAACCUCAUGCUCCAAGAAAACCAGGAUAAAAAAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015762178.1
ncRNA:21   GGAGUACGAGGUUUUUUUGGU   1
  ||||||*||||||=|||||||
targets:1209   CCUCAUCCUCCAAGAAAACCA   1229

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4349534 (LOC4349534), mRNA uncharacterized LOC4349534(LOC4349534) coding protein psRNATarget
CT836977.1
ncRNA:21   GGAGUACGAGGUUUUUUUGGU   1
  |=||||*|||||||||*||||
targets:1035   CUUCAUCCUCCAAAAACACCA   1055

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA123J14, full insert sequence NA coding protein psRNATarget
XM_015761462.1
ncRNA:21   GGAGUACGAGGUUUUUUUGGU   1
  **|*|||||||||=|||||||
targets:970   AAUAAUGCUCCAAGAAAACCA   990

2.5 PREDICTED: Oryza sativa Japonica Group tropinone reductase 1 (LOC4350414), transcript variant X5, mRNA tropinone reductase 1(LOC4350414) coding protein psRNATarget
XM_015761460.1
ncRNA:21   GGAGUACGAGGUUUUUUUGGU   1
  **|*|||||||||=|||||||
targets:1096   AAUAAUGCUCCAAGAAAACCA   1116

2.5 PREDICTED: Oryza sativa Japonica Group tropinone reductase 1 (LOC4350414), transcript variant X3, mRNA tropinone reductase 1(LOC4350414) coding protein psRNATarget
XM_015761461.1
ncRNA:21   GGAGUACGAGGUUUUUUUGGU   1
  **|*|||||||||=|||||||
targets:1630   AAUAAUGCUCCAAGAAAACCA   1650

2.5 PREDICTED: Oryza sativa Japonica Group tropinone reductase 1 (LOC4350414), transcript variant X4, mRNA tropinone reductase 1(LOC4350414) coding protein psRNATarget
AK071696.1
ncRNA:21   GGAGUACGAGGUUUUUUUGGU   1
  **|*|||||||||=|||||||
targets:2233   AAUAAUGCUCCAAGAAAACCA   2253

2.5 Oryza sativa Japonica Group cDNA clone:J023109P16, full insert sequence NA coding protein psRNATarget
XM_015761468.1
ncRNA:21   GGAGUACGAGGUUUUUUUGGU   1
  **|*|||||||||=|||||||
targets:2030   AAUAAUGCUCCAAGAAAACCA   2050

2.5 PREDICTED: Oryza sativa Japonica Group tropinone reductase 1 (LOC4350414), transcript variant X10, mRNA tropinone reductase 1(LOC4350414) coding protein psRNATarget
XM_015761465.1
ncRNA:21   GGAGUACGAGGUUUUUUUGGU   1
  **|*|||||||||=|||||||
targets:2003   AAUAAUGCUCCAAGAAAACCA   2023

2.5 PREDICTED: Oryza sativa Japonica Group tropinone reductase 1 (LOC4350414), transcript variant X8, mRNA tropinone reductase 1(LOC4350414) coding protein psRNATarget
XM_015761464.1
ncRNA:21   GGAGUACGAGGUUUUUUUGGU   1
  **|*|||||||||=|||||||
targets:2016   AAUAAUGCUCCAAGAAAACCA   2036

2.5 PREDICTED: Oryza sativa Japonica Group tropinone reductase 1 (LOC4350414), transcript variant X7, mRNA tropinone reductase 1(LOC4350414) coding protein psRNATarget
XM_015761459.1
ncRNA:21   GGAGUACGAGGUUUUUUUGGU   1
  **|*|||||||||=|||||||
targets:2046   AAUAAUGCUCCAAGAAAACCA   2066

2.5 PREDICTED: Oryza sativa Japonica Group tropinone reductase 1 (LOC4350414), transcript variant X2, mRNA tropinone reductase 1(LOC4350414) coding protein psRNATarget
XM_015761463.1
ncRNA:21   GGAGUACGAGGUUUUUUUGGU   1
  **|*|||||||||=|||||||
targets:2144   AAUAAUGCUCCAAGAAAACCA   2164

2.5 PREDICTED: Oryza sativa Japonica Group tropinone reductase 1 (LOC4350414), transcript variant X6, mRNA tropinone reductase 1(LOC4350414) coding protein psRNATarget
XM_015761458.1
ncRNA:21   GGAGUACGAGGUUUUUUUGGU   1
  **|*|||||||||=|||||||
targets:2158   AAUAAUGCUCCAAGAAAACCA   2178

2.5 PREDICTED: Oryza sativa Japonica Group tropinone reductase 1 (LOC4350414), transcript variant X1, mRNA tropinone reductase 1(LOC4350414) coding protein psRNATarget
AK073048.1
ncRNA:21   GGAGUACGAGGUUUUUUUGGU   1
  **|*|||||||||=|||||||
targets:1977   AAUAAUGCUCCAAGAAAACCA   1997

2.5 Oryza sativa Japonica Group cDNA clone:J033007C03, full insert sequence NA coding protein psRNATarget
XM_015761467.1
ncRNA:21   GGAGUACGAGGUUUUUUUGGU   1
  **|*|||||||||=|||||||
targets:2030   AAUAAUGCUCCAAGAAAACCA   2050

2.5 PREDICTED: Oryza sativa Japonica Group tropinone reductase 1 (LOC4350414), transcript variant X9, mRNA tropinone reductase 1(LOC4350414) coding protein psRNATarget

Reference

1 PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains";
Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C;
Genome Res. 18:1456-1465(2008).
2 PMID:19903869
"Rice MicroRNA effector complexes and targets";
Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y;
Plant Cell. 21:3421-3435(2009).
© 2017 OPP-ncRBASE. All rights reserved.