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BaseInfo

ncRNA ID	osa-miR1862e
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:2523232-2523324 [+]
Reference genome	MSU7
Source	miRBase
Length	24
Mature sequence(if miRNA)	60 - CUAGAUUUGUUUAUUUUGGGACGG - 83
Stem-loop(if miRNA)	--          A            A            UU     U   UAUUUCCUUC UCCCAAAAUGAA AAAUCUAGUACA  AUGUG U   |||||||||| |||||||||||| ||||||||||||  ||||| U   AUGAGGGAGG AGGGUUUUAUUU UUUAGAUCAUGU  UAUAC G CU          C            G            CC     A
Stem-loop sequence	UAUUUCCUUCAUCCCAAAAUGAAAAAAUCUAGUACAUUAUGUGUUUGACAUAUCCUGUACUAGAUUUGUUUAUUUUGGGACGGAGGGAGUAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK120132.1	ncRNA:24   GGCAGGGUUUUAUUUGUUUAGAUC   1   ||||||||*||*|||||||||||| targets:1847   CCGUCCCAUAAAAAACAAAUCUAG   1870 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013027B10, full insert sequence	NA	coding protein	psRNATarget
XM_015780717.1	ncRNA:24   GGCAGGGUUUUAUUUGUUUAGAUC   1   ||||||||*||*|||||||||||| targets:1848   CCGUCCCAUAAAAAACAAAUCUAG   1871 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group F-box/kelch-repeat protein At1g67480 (LOC4335630), transcript variant X5, mRNA	F-box/kelch-repeat protein At1g67480(LOC4335630)	coding protein	psRNATarget
XM_015780715.1	ncRNA:24   GGCAGGGUUUUAUUUGUUUAGAUC   1   ||||||||*||*|||||||||||| targets:1925   CCGUCCCAUAAAAAACAAAUCUAG   1948 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group F-box/kelch-repeat protein At1g67480 (LOC4335630), transcript variant X3, mRNA	F-box/kelch-repeat protein At1g67480(LOC4335630)	coding protein	psRNATarget
XM_015780713.1	ncRNA:24   GGCAGGGUUUUAUUUGUUUAGAUC   1   ||||||||*||*|||||||||||| targets:1942   CCGUCCCAUAAAAAACAAAUCUAG   1965 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group F-box/kelch-repeat protein At1g67480 (LOC4335630), transcript variant X1, mRNA	F-box/kelch-repeat protein At1g67480(LOC4335630)	coding protein	psRNATarget
XM_015780718.1	ncRNA:24   GGCAGGGUUUUAUUUGUUUAGAUC   1   ||||||||*||*|||||||||||| targets:1955   CCGUCCCAUAAAAAACAAAUCUAG   1978 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group F-box/kelch-repeat protein At1g67480 (LOC4335630), transcript variant X6, mRNA	F-box/kelch-repeat protein At1g67480(LOC4335630)	coding protein	psRNATarget
XM_015780716.1	ncRNA:24   GGCAGGGUUUUAUUUGUUUAGAUC   1   ||||||||*||*|||||||||||| targets:2138   CCGUCCCAUAAAAAACAAAUCUAG   2161 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group F-box/kelch-repeat protein At1g67480 (LOC4335630), transcript variant X4, mRNA	F-box/kelch-repeat protein At1g67480(LOC4335630)	coding protein	psRNATarget
XM_015780714.1	ncRNA:24   GGCAGGGUUUUAUUUGUUUAGAUC   1   ||||||||*||*|||||||||||| targets:2155   CCGUCCCAUAAAAAACAAAUCUAG   2178 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group F-box/kelch-repeat protein At1g67480 (LOC4335630), transcript variant X2, mRNA	F-box/kelch-repeat protein At1g67480(LOC4335630)	coding protein	psRNATarget
XM_015771059.1	ncRNA:24   GGCAGGGUUUUAUUUGUUUAGAUC   1   |=||||||*||*|||||||||||| targets:3087   CUGUCCCAUAAAAAACAAAUCUAG   3110 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group SART-1 family protein DOT2 (LOC4329455), transcript variant X2, mRNA	SART-1 family protein DOT2(LOC4329455)	coding protein	psRNATarget
AK288920.1	ncRNA:24   GGCAGGGUUUUAUUUGUUUAGAUC   1   =|*||||=|||*|||||||||||| targets:853   UCAUCCCGAAAAAAACAAAUCUAG   876 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090081L22, full insert sequence	NA	coding protein	psRNATarget
CT834276.1	ncRNA:24   GGCAGGGUUUUAUUUGUUUAGAUC   1   ||*|||||*||*|||||||||||| targets:1752   CCAUCCCAUAAAAAACAAAUCUAG   1775 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110F09, full insert sequence	NA	coding protein	psRNATarget
CT835495.1	ncRNA:24   GGCAGGGUUUUAUUUGUUUAGAUC   1   =**||||||||*|||||||||||* targets:635   UACUCCCAAAAAAAACAAAUCUAA   658 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN069D03, full insert sequence	NA	coding protein	psRNATarget
XM_015756492.1	ncRNA:24   GGCAGGGUUUUAUUUGUUUAGAUC   1   |*||=||||*|||*|||||||||| targets:323   CGGUUCCAACAUACACAAAUCUAG   346 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group auxin-responsive protein SAUR41 (LOC9270862), mRNA	auxin-responsive protein SAUR41(LOC9270862)	coding protein	psRNATarget
XM_015775913.1	ncRNA:24   GGCAGGGUUUUAUUUGUUUAGAUC   1   =*||=*||||||||||*||||||| targets:739   UAGUUGCAAAAUAAACCAAUCUAG   762 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4334008 (LOC4334008), mRNA	uncharacterized LOC4334008(LOC4334008)	coding protein	psRNATarget

Reference

1	PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"; Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C; Genome Res. 18:1456-1465(2008).