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BaseInfo

ncRNA ID	osa-miR5082
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:1286146-1286686 [+]
Reference genome	MSU7
Source	miRBase
Length	24
Mature sequence(if miRNA)	508 - UGCGAUGAUGGCCGCGCGGGUUCA - 531
Stem-loop(if miRNA)	GGCGGGC        G  -        G      G  -  GG    G     CG    -  ----G   -C     C     C -    GG   --   A   -    GGCG    -----   GGA   ---      U GAGAGAGUGAUUUUAUAGCGAGGGGAUUAGGGUUUAGCUCUAGUGGGCCAUGGGGGAUAGUUAGUGGACCACUAUGGGCCGGGCUAGAAUUAGUUGGGCCUUCGCGAGCCCAACUUGUGGGCUAGUUUUUCGCUUGUAAAAGGCCAU        GGGUGAGC CG GCGGCCAU GUUGCG CG GU  UGGC CGCGG  GCGG CG     CGG  UAGGG UCAGG G GCUU  UGC  GGG GAG AGGC    GCGA     AGG   GAG   AUCGCU C                                                                                                                                                   G        |||||||| || |||||||| |||||| || ||  |||| |||||  |||| ||     |||  ||||| ||||| | ||||  |||  ||| ||| ||||    ||||     |||   |||   |||||| |        CCCACUUG GC CGCCGGUA UAGCGU GC CG  GCUG GCGCC  CGUC GC     CGA  GGCGG CCGCU G CGGU  GCC  UGG CUU GGCG    GAGA     GGU   UGU   GCGCGG U                                                                                                                                                   G CAACAAA        G  G        G      -  G  AG    -     --    A  AGUAG   GU     -     - A    --   CU   -   G    ----    AAGGG   ---   UUC      - GGAAGGGCGGUUGGCAUGCUCCUGCAGCCACCGCCGCGCUUACAGCCUCUCCGCUGAGGCCGGCGGCGCCGCGGCGGCCUGCCGUUCGAGCCUAUUCUAGUUCAUCACAAGCACUCCCAGCUUUGGGAUCGAGCGGCGGAGGAGGGG
Stem-loop sequence	GGCGGGCGGGUGAGCGCGGCGGCCAUGGUUGCGGCGGUGGUGGCGCGCGGCGGCGGCGGCGGCUAGGGCUCAGGCGGCUUGGUGCGGGAGAGAGGCGGCGGCGAAGGGGAGAGAUCGCUUCGAGAGAGUGAUUUUAUAGCGAGGGGAUUAGGGUUUAGCUCUAGUGGGCCAUGGGGGAUAGUUAGUGGACCACUAUGGGCCGGGCUAGAAUUAGUUGGGCCUUCGCGAGCCCAACUUGUGGGCUAGUUUUUCGCUUGUAAAAGGCCAUGGGGGGAGGAGGCGGCGAGCUAGGGUUUCGACCCUCACGAACACUACUUGAUCUUAUCCGAGCUUGCCGUCCGGCGGCGCCGCGGCGGCCGGAGUCGCCUCUCCGACAUUCGCGCCGCCACCGACGUCCUCGUACGGUUGGCGGGAAGGUGGCGCGCUUUGUUGGGGGAAAGAGGCGGGUUCGGUUCCCGUGGCAGUCGCCGGCGGUGAGCGAUGACGACUGCCCGCGGUCGGAGCGCGUGCGAUGAUGGCCGCGCGGGUUCACCCAAACAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015782157.1	ncRNA:24   ACUUGGGCGCGCCGGUAGUAGCGU   1   *|***|||||||||||||=||||= targets:50   CGCCGCCGCGCGGCCAUCGUCGCG   73 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339658 (LOC4339658), mRNA	uncharacterized LOC4339658(LOC4339658)	coding protein	psRNATarget
AK069714.1	ncRNA:24   ACUUGGGCGCGCCGGUAGUAGCGU   1   *|***|||||||||||||=||||= targets:66   CGCCGCCGCGCGGCCAUCGUCGCG   89 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023030K16, full insert sequence	NA	coding protein	psRNATarget
AK069416.1	ncRNA:24   ACUUGGGCGCGCCGGUAGUAGCGU   1   *|***|||||||||||||=||||= targets:16   CGCCGCCGCGCGGCCAUCGUCGCG   39 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023016D11, full insert sequence	NA	coding protein	psRNATarget
CT832892.1	ncRNA:24   ACUUGGGCGC-GCCGGUAGUAGCGU   1   ***==|||||-|||||||||||||* targets:80   GCCGUCCGCGGCGGCCAUCAUCGCU   104 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA245M22, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:21352554 "Discovery of barley miRNAs through deep sequencing of short reads"; Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U; BMC Genomics. 12:129(2011).