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BaseInfo

ncRNA ID osa-miR810b.1
Species Oryza sativa
Class miRNA
Genome position Chr11:959574-959796 [-]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 60 - UGAACACCGAUAUGCGUCAUC - 80
Stem-loop(if miRNA) ----   C                        AAUA                             C                                               C
    AGC CACCACAUGUGGCUCGCAUGCUUA    ACUAACGGCAUAAUUAGAUCACUUGAUGA GACGUAUAUCGGUGUUCGCUAUAUAUACUAUCUACUGGUAAGUAUAU U
    ||| ||||||||||||||||||||||||    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| U
    UCG GUGGUGUACACCGAGCGUACGAAU    UGAUUGCCGUAUUAAUUUAGUGAACUACU CUGCGUAUAGCCACAAGUGAUAUAUAUGAUAGAUGACCAUUCAUAUA U
GCAU   A                        ----                             A                                               A
Stem-loop sequence AGCCCACCACAUGUGGCUCGCAUGCUUAAAUAACUAACGGCAUAAUUAGAUCACUUGAUGACGACGUAUAUCGGUGUUCGCUAUAUAUACUAUCUACUGGUAAGUAUAUCUUUAAUAUACUUACCAGUAGAUAGUAUAUAUAGUGAACACCGAUAUGCGUCAUCAUCAAGUGAUUUAAUUAUGCCGUUAGUUAAGCAUGCGAGCCACAUGUGGUGAGCUUACG

Reference

1 PMID:18353984
"Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)";
Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ;
Proc Natl Acad Sci U S A. 105:4951-4956(2008).
2 PMID:18312648
"Identification of novel and candidate miRNAs in rice by high throughput sequencing";
Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK;
BMC Plant Biol. 8:25(2008).