ncRNA ID | osa-miR810b.1 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr11:959574-959796 [-] |
Reference genome | MSU7 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 60 - UGAACACCGAUAUGCGUCAUC - 80 |
Stem-loop(if miRNA) |
----   C                        AAUA                             C                                               C     AGC CACCACAUGUGGCUCGCAUGCUUA    ACUAACGGCAUAAUUAGAUCACUUGAUGA GACGUAUAUCGGUGUUCGCUAUAUAUACUAUCUACUGGUAAGUAUAU U     ||| ||||||||||||||||||||||||    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| U     UCG GUGGUGUACACCGAGCGUACGAAU    UGAUUGCCGUAUUAAUUUAGUGAACUACU CUGCGUAUAGCCACAAGUGAUAUAUAUGAUAGAUGACCAUUCAUAUA U GCAU   A                        ----                             A                                               A |
Stem-loop sequence | AGCCCACCACAUGUGGCUCGCAUGCUUAAAUAACUAACGGCAUAAUUAGAUCACUUGAUGACGACGUAUAUCGGUGUUCGCUAUAUAUACUAUCUACUGGUAAGUAUAUCUUUAAUAUACUUACCAGUAGAUAGUAUAUAUAGUGAACACCGAUAUGCGUCAUCAUCAAGUGAUUUAAUUAUGCCGUUAGUUAAGCAUGCGAGCCACAUGUGGUGAGCUUACG |
1 | PMID:18353984
"Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)"; Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ; Proc Natl Acad Sci U S A. 105:4951-4956(2008). |
2 | PMID:18312648
"Identification of novel and candidate miRNAs in rice by high throughput sequencing"; Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK; BMC Plant Biol. 8:25(2008). |