Search result

BaseInfo

ncRNA ID	osa-miR816
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:21808333-21808409 [+]
Reference genome	MSU7
Source	miRBase
Length	20
Mature sequence(if miRNA)	3 - GUGACAUAUUUUACUACAAC - 22
Stem-loop(if miRNA)	C   A      C        A A AUGUGACAUAUUUUA UAC ACGAAU UGGAUAUG C G ||||||||||||||| ||| |||||| |||||||| | UACACUGUGUAGGAU AUG UGCUUA AUUUGUAU G A                U   A      A        - G
Stem-loop sequence	AUGUGACAUAUUUUACUACAACGAAUCUGGAUAUGACAGAGGUAUGUUUAAAUUCGUAGUAUUAGGAUGUGUCACAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ236010.1	ncRNA:20   CAACAUCAUUUUAUACAGUG   1   ||||||*||=|||||||||| targets:66   GUUGUAUUAGAAUAUGUCAC   85 Target Full Sequence	2.5	Sequence 2005 from Patent EP2985353	NA	coding protein	psRNATarget
HI403880.1	ncRNA:20   CAACAUCAUUUUAUACAGUG   1   ||||||*||=|||||||||| targets:66   GUUGUAUUAGAAUAUGUCAC   85 Target Full Sequence	2.5	Sequence 2005 from Patent EP2074227	NA	coding protein	psRNATarget
JB164341.1	ncRNA:20   CAACAUCAUUUUAUACAGUG   1   ||||||*||=|||||||||| targets:66   GUUGUAUUAGAAUAUGUCAC   85 Target Full Sequence	2.5	Sequence 2005 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015759388.1	ncRNA:20   CAACAUCAUUUUAUACAGUG   1   *|||||*||=|||||||||| targets:459   AUUGUACUAGAAUAUGUCAC   478 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ent-cassadiene C2-hydroxylase-like (LOC4348721), transcript variant X2, mRNA	ent-cassadiene C2-hydroxylase-like(LOC4348721)	coding protein	psRNATarget
XM_015762321.1	ncRNA:20   CAACAUCAUUUUAUACAGUG   1   *||||*|||=|||||||||| targets:568   AUUGUUGUAGAAUAUGUCAC   587 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transcription initiation factor TFIID subunit 13 (LOC9268703), mRNA	transcription initiation factor TFIID subunit 13(LOC9268703)	coding protein	psRNATarget

Reference

1	PMID:16959252 "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"; Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH; FEBS Lett. 580:5111-5116(2006).