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BaseInfo

ncRNA ID	osa-miR5538
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:21337283-21337405 [+]
Reference genome	MSU7
Source	miRBase
Length	22
Mature sequence(if miRNA)	11 - ACUGAACUCAAUCACUUGCUGC - 32
Stem-loop(if miRNA)	AUGAG        -GA     -A  A   -G  G     ------A -     AGUUUUCUGUUGA      GAACUACU   ACUCA  UC CUU  CU CCGUU       C UCAAC             G      ||||||||   |||||  || |||  || |||||       | |||||      CUUGAUGG   UGAGU  AG GAG  GA GGCAA       C GAUGG             G GGUAA        GGA     GG  -   AG  G     GAUUAAA U     AGAUGCCCUAUCU
Stem-loop sequence	AUGAGGAACUACUGAACUCAAUCACUUGCUGCCGUUACUCAACAGUUUUCUGUUGAGGUCUAUCCCGUAGAGGUAGUCAAAUUAGAACGGGAGGAGAGGAGGUGAGUAGGGGUAGUUCAAUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288604.1	ncRNA:22   CGUCGUUCACUAACUCAAGUCA   1   |||||||||||||||||||||| targets:435   GCAGCAAGUGAUUGAGUUCAGU   456 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090052J10, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011).