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BaseInfo

ncRNA ID	osa-miR171d-5p
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:21237313-21237447 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	13 - UGUUGGCCCGGCUCACUCAGA - 33
Stem-loop(if miRNA)	UUGUA   AU         C       C     ----------    U   C G    -GA   G     GA      GCU  GAUGUUGGC CGGCUCA UCAGA          UGGA CAU G UGCA   AGA UGCAU  A      |||  ||||||||| ||||||| |||||          |||| ||| | ||||   ||| |||||  U      CGA  CUAUAACCG GCCGAGU AGUCU          ACCU GUA U AUGU   UCU ACGUA  C UACCA   CU         U       U     UCAAGGUCGU    C   - G    GAC   G     GU
Stem-loop sequence	UUGUAGCUAUGAUGUUGGCCCGGCUCACUCAGAUGGAUCAUCGGUGCAGAAGAGUGCAUGAAUCUGAUGCAGUCUCAGUGUAGUAUGCUCCAUGCUGGAACUUCUGAUUGAGCCGUGCCAAUAUCUCAGCACCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015783363.1	ncRNA:21   AGACUCACUCGGCCCGGUUGU   1   ||||||**||||||||||||| targets:1119   UCUGAGCUAGCCGGGCCAACA   1139 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281021 (LOC107281021), mRNA	uncharacterized LOC107281021(LOC107281021)	coding protein	psRNATarget

Reference

1	PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004).
2	PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors"; Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y; PLoS Pathog. 7:e1002176(2011).