Search result

BaseInfo

ncRNA ID	osa-miR166a-3p
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:19987135-19987279 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	110 - UCGGACCAGGCUUCAUUCCCC - 130
Stem-loop(if miRNA)	U         UGCU      U      UU         A          ----C   UUGCGGUUUUGAGGAUGA  GAAGCUAUU    UCUGAG GGAAUG  GUCUGGUUC AGGUCUCAUG     ACC                  U  |||||||||    |||||| ||||||  ||||||||| ||||||||||     |||                  U  CUUCGAUAG    AGACUC CCUUAC  CGGACCAGG UCUAGGGUGC     CUC                  U A         ----      C      UU         C          CUACU   CUUACUUUUUGGAACGUG
Stem-loop sequence	UGAAGCUAUUUGCUUCUGAGUGGAAUGUUGUCUGGUUCAAGGUCUCAUGCACCUUGCGGUUUUGAGGAUGAUUUGUGCAAGGUUUUUCAUUCCUCUCAUCCGUGGGAUCUCGGACCAGGCUUCAUUCCCCUCAGAGAUAGCUUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AB374207.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:834   CUGGGAUGAAGCCUGGUCCGG   854 Target Full Sequence	2.0	Oryza sativa Japonica Group OSHB5 mRNA for class III homeodomain-leucine zipper protein, complete cds	NA	coding protein	psRNATarget
XM_015777224.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:715   CUGGGAUGAAGCCUGGUCCGG   735 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group homeobox-leucine zipper protein HOX10 (LOC4331345), transcript variant X2, mRNA	homeobox-leucine zipper protein HOX10(LOC4331345)	coding protein	psRNATarget
AK102830.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:697   CUGGGAUGAAGCCUGGUCCGG   717 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033109G06, full insert sequence	NA	coding protein	psRNATarget
XM_015769204.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:834   CUGGGAUGAAGCCUGGUCCGG   854 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group homeobox-leucine zipper protein HOX29 (LOC4327348), mRNA	homeobox-leucine zipper protein HOX29(LOC4327348)	coding protein	psRNATarget
AY423716.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:850   CUGGGAUGAAGCCUGGUCCGG   870 Target Full Sequence	2.0	Oryza sativa (japonica cultivar-group) homeodomain leucine-zipper protein Hox9 mRNA, complete cds	NA	coding protein	psRNATarget
AK102603.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:921   CUGGGAUGAAGCCUGGUCCGG   941 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033098N12, full insert sequence	NA	coding protein	psRNATarget
AK102378.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:973   CUGGGAUGAAGCCUGGUCCGG   993 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033091P14, full insert sequence	NA	coding protein	psRNATarget
AY425991.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:973   CUGGGAUGAAGCCUGGUCCGG   993 Target Full Sequence	2.0	Oryza sativa (japonica cultivar-group) homeodomain leucine-zipper protein Hox10 mRNA, complete cds	NA	coding protein	psRNATarget
XM_015777223.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:979   CUGGGAUGAAGCCUGGUCCGG   999 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group homeobox-leucine zipper protein HOX10 (LOC4331345), transcript variant X1, mRNA	homeobox-leucine zipper protein HOX10(LOC4331345)	coding protein	psRNATarget
XM_015759415.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:981   CUGGGAUGAAGCCUGGUCCGG   1001 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group homeobox-leucine zipper protein HOX9 (LOC4348919), mRNA	homeobox-leucine zipper protein HOX9(LOC4348919)	coding protein	psRNATarget
AK288397.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   |*|||||||||||||*||||| targets:1245   GAGGAAUGAAGCCUGAUCCGA   1265 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090028B18, full insert sequence	NA	coding protein	psRNATarget
XM_015768343.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   ||*|||*|||||||||||||* targets:360   GGUGAAGGAAGCCUGGUCCGU   380 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group protein DETOXIFICATION 49 (LOC4330303), mRNA	protein DETOXIFICATION 49(LOC4330303)	coding protein	psRNATarget
XM_015778639.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   ||*|||*|||||||||||||* targets:394   GGUGAACGAAGCCUGGUCCGU   414 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group protein DETOXIFICATION 49 (LOC4336717), mRNA	protein DETOXIFICATION 49(LOC4336717)	coding protein	psRNATarget
AK241934.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   ||*|||*|||||||||||||* targets:401   GGUGAACGAAGCCUGGUCCGU   421 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J075082P08, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:12101121 "MicroRNAs in plants"; Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP; Genes Dev. 16:1616-1626(2002).
2	PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors"; Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y; PLoS Pathog. 7:e1002176(2011).