Search result

BaseInfo

ncRNA ID	osa-miR7694-3p
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:18864335-18864501 [-]
Reference genome	MSU7
Source	miRBase
Length	22
Mature sequence(if miRNA)	48 - CCAUAUUCGUAGUGCUAGGUGG - 69
Stem-loop(if miRNA)	U         UG   C           A       C        U                    C         ---AGG GU  UACUCCCUU  UCC AAAAUAUAGCA CCUAGUA UGGAUUAG CACCACCUAGUAUUAUGAAU UGGACAGAG      G  U  |||||||||  ||| ||||||||||| ||||||| |||||||| |||||||||||||||||||| |||||||||      |  AUGAGGGAG  AGG UUUUAUAUCGU GGAUCAU ACCUAAUC GUGGUGGAUCGUGAUGCUUA ACCUGUCUC      C  G G         GU   U           C       A        U                    U         GGGAGA AG
Stem-loop sequence	UUACUCCCUUUGUCCCAAAAUAUAGCAACCUAGUACUGGAUUAGUCACCACCUAGUAUUAUGAAUCUGGACAGAGAGGGGUUGGACAGAGGGCUCUGUCCAUAUUCGUAGUGCUAGGUGGUGUCUAAUCCAAUACUAGGCUGCUAUAUUUUUGGAUGGAGGGAGUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK107672.1	ncRNA:22   GGUGGAUCGUGAUGCUUAUACC   1   =**|||||=|||||||||*||| targets:877   UAUCCUAGUACUACGAAUCUGG   898 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-131-H10, full insert sequence	NA	coding protein	psRNATarget

Reference

1

PMID:23627500 "Identification of a novel microRNA (miRNA) from rice that targets an alternatively spliced transcript of the Nramp6 (Natural resistance-associated macrophage protein 6) gene involved in pathogen resistance"; Campo S, Peris-Peris C, Sire C, Moreno AB, Donaire L, Zytnicki M, Notredame C, Llave C, San Segundo B; New Phytol. 199:212-227(2013).