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BaseInfo

ncRNA ID osa-miR5820
Species Oryza sativa
Class miRNA
Genome position Chr10:13982605-13982688 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 54 - UGGCAGAGAUUGAUCGAGGAA - 74
Stem-loop(if miRNA)       UGAACU   A    UA    ---        A  U   U
GGAAAU      UAA UCCU  AUCG   UUUGCUAG UU UUC U
||||||      ||| ||||  ||||   |||||||| || |||
CCUUUA      GUU AGGA  UAGU   AGACGGUC AG GAG G
      -----U   A    GC    UAG        C  U   U
Stem-loop sequence GGAAAUUGAACUUAAAUCCUUAAUCGUUUGCUAGAUUUUUCUUGUGAGUGACCUGGCAGAGAUUGAUCGAGGAAUUGUAUUUCC

Reference

1 PMID:22158467
"Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage";
Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ;
Plant Cell. 23:4185-4207(2011).