| ncRNA ID | osa-miR5537 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr10:11112663-11112792 [+] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 22 |
| Mature sequence(if miRNA) | 99 - AAUGUUUGUAUGGAUCGUUUGU - 120 |
| Stem-loop(if miRNA) |
U UUAAUU A G AAU UU -AC G AAAAAUUUCUAAUGAUAAUAUA UGUUUUA G CUA AAA GUCCGUGCA ACA G GUG U ||||||| | ||| ||| ||||||||| ||| | ||| ACAAAAU C GAU UUU UAGGUAUGU UGU G GUA A - ------ - G -GC -U AAC - ACUGUACCAAUACGUACUUUUU |
| Stem-loop sequence | UUGUUUUAUUAAUUGACUAGAAAAAUGUCCGUGCAUUACAACGGGUGAAAAAUUUCUAAUGAUAAUAUAUAUUUUUCAUGCAUAACCAUGUCAAUGGCAAUGUUUGUAUGGAUCGUUUGUAGCUAAAACA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AK243624.1 |
|
2.5 | Oryza sativa Japonica Group cDNA, clone: J100086H16, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| XM_015761346.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group protein trichome birefringence-like 10 (LOC4349771), mRNA | protein trichome birefringence-like 10(LOC4349771) | coding protein | psRNATarget |
| 1 | PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011). |