| ncRNA ID | osa-miR5079b |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr10:10915695-10916100 [-] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 22 |
| Mature sequence(if miRNA) | 375 - UUUGGAUCUGUUAUUUUGGUAU - 396 |
| Stem-loop(if miRNA) |
--U AUAA G U GG AUC U -A ACAUA - GU ------ C UACCCAUCUAAAUGAUUACAUAACAUAAAACCUUAAUGAAAUGGAAAAAACUUCCAUUUUUGUGUUUGAUUUGAGAACCCCUUGAACGCCUUCUCAAAGGGUUCUCAAAAAUUCGAGAUAGAUCUAA UUCUU UUU GAUCUGU AUUUU UAUCA UA UAGGAAU GGUUU GUUA UG UC AUUUA AU U ||||| ||| ||||||| ||||| ||||| || ||||||| ||||| |||| || || ||||| || GAGAA AAA UUAGACA UAGAA AUGGU AU AUCCUUA CAUAA AUAG UC UA GAGAG GA U CUU --AG A - AA --C U GC ----- G -- AAACAA C UAGGCAACUGUCCCAUCUCCGAGACAAUAGGUUAAUAAUAGGAUUUAUCCUAAAAAAAAGAAGAUGAUCAGGCGAGAUAUAAGGUAUCACCUUUAUGAUUUUUUAAGUCUUUUUUCAUUUUCUCAGA |
| Stem-loop sequence | UUUCUUAUAAUUUGGAUCUGUUAUUUUGGUAUCAAUCUAUUAGGAAUAGGUUUACAUAGUUAUGGUUCAUUUACAUUACCCAUCUAAAUGAUUACAUAACAUAAAACCUUAAUGAAAUGGAAAAAACUUCCAUUUUUGUGUUUGAUUUGAGAACCCCUUGAACGCCUUCUCAAAGGGUUCUCAAAAAUUCGAGAUAGAUCUAAUUAGACUCUUUUACUUUUUUCUGAAUUUUUUAGUAUUUCCACUAUGGAAUAUAGAGCGGACUAGUAGAAGAAAAAAAAUCCUAUUUAGGAUAAUAAUUGGAUAACAGAGCCUCUACCCUGUCAACGGAUAGCGAGAGAACAAAAUCUGGAUAAAUACCGAUUCCUAUUACUGGUAAAAAGAUACAGAUUAAAAGAAAGAGUUC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CT835074.1 |
|
0.0 | Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN049A16, full insert sequence | NA | coding protein | psRNATarget |
| 1 | PMID:21352554
"Discovery of barley miRNAs through deep sequencing of short reads"; Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U; BMC Genomics. 12:129(2011). |