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BaseInfo

ncRNA ID	osa-miR398a
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:9216250-9216364 [-]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - UGUGUUCUCAGGUCACCCCUU - 31
Stem-loop(if miRNA)	GCU           A   GUA            G   CAAUACAA   AUGGUGAGCUAC    GAACCCAGAGG GUG   CUGAGAACACAG UGC        UGU            U    ||||||||||| |||   |||||||||||| |||        |||            G    UUUGGGUUUCC CAC   GACUCUUGUGUC AUG        CUU            U UUC           C   -UG            A   -------U   AAUGAGGUAAUA
Stem-loop sequence	GCUGAACCCAGAGGAGUGGUACUGAGAACACAGGUGCCAAUACAAUGUAUGGUGAGCUACUGUAUAAUGGAGUAAUUCUGUAACUGUGUUCUCAGGUCACCCCUUUGGGUUUCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT131357.1	ncRNA:21   UUCCCCACUGGACUCUUGUGU   1   *||||||*=|||||||||||| targets:29   CAGGGGUCGCCUGAGAACACA   49 Target Full Sequence	2.5	Oryza sativa clone RRlibC01031 mRNA sequence	NA	coding protein	psRNATarget
AK243377.1	ncRNA:21   UUCCCCACUGGACUCUUGUGU   1   *||||||*=|||||||||||| targets:41   CAGGGGUCGCCUGAGAACACA   61 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J100063A11, full insert sequence	NA	coding protein	psRNATarget
EU325984.1	ncRNA:21   UUCCCCACUGGACUCUUGUGU   1   *||||||*=|||||||||||| targets:17   CAGGGGUCGCCUGAGAACACA   37 Target Full Sequence	2.5	Oryza sativa Japonica Group cultivar Wuyujing 3 copper/zinc-superoxide dismutase mRNA, complete cds	NA	coding protein	psRNATarget
BT129027.1	ncRNA:21   UUCCCCACUGGACUCUUGUGU   1   *||||||*=|||||||||||| targets:58   CAGGGGUCGCCUGAGAACACA   78 Target Full Sequence	2.5	Oryza sativa clone RRlibA00220 mRNA sequence	NA	coding protein	psRNATarget
XM_015792285.1	ncRNA:21   UUCCCCACUGGACUCUUGUGU   1   *||||||*=|||||||||||| targets:140   CAGGGGUCGCCUGAGAACACA   160 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group superoxide dismutase [Cu-Zn] 2 (LOC4344210), mRNA	superoxide dismutase [Cu-Zn] 2(LOC4344210)	coding protein	psRNATarget

Reference

1	PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004).