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BaseInfo

ncRNA ID osa-miR398a
Species Oryza sativa
Class miRNA
Genome position Chr10:9216250-9216364 [-]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - UGUGUUCUCAGGUCACCCCUU - 31
Stem-loop(if miRNA) GCU           A   GUA            G   CAAUACAA   AUGGUGAGCUAC
   GAACCCAGAGG GUG   CUGAGAACACAG UGC        UGU            U
   ||||||||||| |||   |||||||||||| |||        |||            G
   UUUGGGUUUCC CAC   GACUCUUGUGUC AUG        CUU            U
UUC           C   -UG            A   -------U   AAUGAGGUAAUA
Stem-loop sequence GCUGAACCCAGAGGAGUGGUACUGAGAACACAGGUGCCAAUACAAUGUAUGGUGAGCUACUGUAUAAUGGAGUAAUUCUGUAACUGUGUUCUCAGGUCACCCCUUUGGGUUUCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT131357.1
ncRNA:21   UUCCCCACUGGACUCUUGUGU   1
  *||||||*=||||||||||||
targets:29   CAGGGGUCGCCUGAGAACACA   49

2.5 Oryza sativa clone RRlibC01031 mRNA sequence NA coding protein psRNATarget
AK243377.1
ncRNA:21   UUCCCCACUGGACUCUUGUGU   1
  *||||||*=||||||||||||
targets:41   CAGGGGUCGCCUGAGAACACA   61

2.5 Oryza sativa Japonica Group cDNA, clone: J100063A11, full insert sequence NA coding protein psRNATarget
EU325984.1
ncRNA:21   UUCCCCACUGGACUCUUGUGU   1
  *||||||*=||||||||||||
targets:17   CAGGGGUCGCCUGAGAACACA   37

2.5 Oryza sativa Japonica Group cultivar Wuyujing 3 copper/zinc-superoxide dismutase mRNA, complete cds NA coding protein psRNATarget
BT129027.1
ncRNA:21   UUCCCCACUGGACUCUUGUGU   1
  *||||||*=||||||||||||
targets:58   CAGGGGUCGCCUGAGAACACA   78

2.5 Oryza sativa clone RRlibA00220 mRNA sequence NA coding protein psRNATarget
XM_015792285.1
ncRNA:21   UUCCCCACUGGACUCUUGUGU   1
  *||||||*=||||||||||||
targets:140   CAGGGGUCGCCUGAGAACACA   160

2.5 PREDICTED: Oryza sativa Japonica Group superoxide dismutase [Cu-Zn] 2 (LOC4344210), mRNA superoxide dismutase [Cu-Zn] 2(LOC4344210) coding protein psRNATarget

Reference

1 PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA";
Jones-Rhoades MW, Bartel DP;
Mol Cell. 14:787-799(2004).