| ncRNA ID | osa-miR1438 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr10:8429612-8429798 [+] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 22 |
| Mature sequence(if miRNA) | 19 - AGGGUAAUUUUAUCAUUUUUAA - 40 |
| Stem-loop(if miRNA) |
U A AAG U C C C A C CUAUGUAAA -UA U GUUG G UAU GU UUAGGGUAAUUUUAU AUUUUUAAGAAAACAAAAUUUAAUAC UU AGAU UU GGUAU AAAUUUU GA C |||| | ||| || ||||||||||||||| |||||||||||||||||||||||||| || |||| || ||||| ||||||| || UAAC C AUA CA AAUCCCAUUAAAAUA UAAAAAUUCUUUUGUUUUAAAUUAUG AA UCUA AA CCAUA UUUAAAA CU C U C AUA U U C A A U --------A UAA C |
| Stem-loop sequence | GUUGUGAUAUAAGGUUUUAGGGUAAUUUUAUCAUUUUUAAGAAAACAAAAUUUAAUACCUUCAGAUAUUCGGUAUCUAUGUAAAAAAUUUUUAGAUCCCUCAAUAAAAUUUAAUACCUAAAAUCUAAACGUAUUAAAUUUUGUUUUCUUAAAAAUUAUAAAAUUACCCUAAUACAUAAUACCUCAAU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_015787953.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group U-box domain-containing protein 52 (LOC4340371), transcript variant X1, mRNA | U-box domain-containing protein 52(LOC4340371) | coding protein | psRNATarget | |||||||||
| AK288633.1 |
|
1.5 | Oryza sativa Japonica Group cDNA, clone: J090055E11, full insert sequence | NA | coding protein | psRNATarget |
| 1 | PMID:18312648
"Identification of novel and candidate miRNAs in rice by high throughput sequencing"; Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK; BMC Plant Biol. 8:25(2008). |