| ncRNA ID | osa-miR1879 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr10:5635320-5635469 [+] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 24 |
| Mature sequence(if miRNA) | 112 - GUGUUUGGUUUAGGGAUGAGGUGG - 135 |
| Stem-loop(if miRNA) |
---U - C -- AC AAAUGGCUUGUUGAGGAAUAAACAUCUUG CC AACCCAUCCCACCUCGUCCC AAACCAAACACA UGC GC C || |||||||||||||||||||| |||||||||||| ||| || GG UUGGGUAGGGUGGAGUAGGG UUUGGUUUGUGU ACG AA U ACCU A A AU -- CUUCUUAUAGUAUCAAAUCUUACGUUCCC |
| Stem-loop sequence | UCCAACCCAUCCCACCUCGUCCCCAAACCAAACACAUGCACGCAAAUGGCUUGUUGAGGAAUAAACAUCUUGCUCCCUUGCAUUCUAAACUAUGAUAUUCUUCAAGCAUAUGUGUUUGGUUUAGGGAUGAGGUGGGAUGGGUUAGGUCCA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AK288481.1 |
|
0.0 | Oryza sativa Japonica Group cDNA, clone: J090039O20, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| AK108294.1 |
|
2.5 | Oryza sativa Japonica Group cDNA clone:002-141-E04, full insert sequence | NA | coding protein | psRNATarget |
| 1 | PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"; Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C; Genome Res. 18:1456-1465(2008). |