Search result

BaseInfo

ncRNA ID osa-miR1876
Species Oryza sativa
Class miRNA
Genome position Chr10:4833365-4833521 [+]
Reference genome MSU7
Source miRBase
Length 24
Mature sequence(if miRNA) 106 - AUAAGUGGGUUUGUGGGCUGGCCC - 129
Stem-loop(if miRNA) GGCA     GUUGG  UU    UG A       U    UG   UU                     C     G UA    
    CAUAU     UA  CUAU  G AUGCAAG GGGC  GCU  UGAACCCAUUUAUGGGCUAUU AAGUG G  AACCA
    |||||     ||  ||||  | ||||||| ||||  |||  ||||||||||||||||||||| ||||| |  ||||U
    GUAUG     AU  GAUA  C UAUGUUC CCCG  CGG  GUUUGGGUGAAUAUCCGGUAA UUCAC U  UUGGA
-UUA     -----  UU    GU C       U    GU   GU                     A     G GG    
Stem-loop sequence GGCACAUAUGUUGGUAUUCUAUUGGAAUGCAAGUGGGCUGGCUUUUGAACCCAUUUAUGGGCUAUUCAAGUGGGUAAACCAUAGGUUGGUGCACUUAAAUGGCCUAUAAGUGGGUUUGUGGGCUGGCCCUCUUGUAUCCUGAUAGUUUAGUAUGAUU

Reference

1 PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains";
Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C;
Genome Res. 18:1456-1465(2008).