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BaseInfo

ncRNA ID	osa-miR5080
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:2322020-2322108 [-]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - AAAAGGAUCAUACCGUGACAG - 31
Stem-loop(if miRNA)	ACACAC    -   -  -  A      AC    AAGAA  GUGAGUU       AUAC CUG CA GG GUGGUU  UUUG     AC       C       |||| ||| || || ||||||  ||||     ||       UAUG GAC GU CC UACUAG  AAAC     AG       A -ACUUC    A   A  G  A      GA    ---GA  UUACAGG
Stem-loop sequence	ACACACAUACCUGCAGGAGUGGUUACUUUGAAGAAACGUGAGUUCAGGACAUUGAAGCAAAAGGAUCAUACCGUGACAGAGUAUCUUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288223.1	ncRNA:21   GACAGUGCCAUACUAGGAAAA   1   |||*||||||*|||||||||| targets:3386   CUGCCACGGUUUGAUCCUUUU   3406 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090012A17, full insert sequence	NA	coding protein	psRNATarget
AK288355.1	ncRNA:21   GACAGUGCCAUACUAGGAAAA   1   |*|||||||||*||||||||| targets:5230   CCGUCACGGUACGAUCCUUUU   5250 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090024I05, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:21352554 "Discovery of barley miRNAs through deep sequencing of short reads"; Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U; BMC Genomics. 12:129(2011).