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BaseInfo

ncRNA ID	osa-miR5526
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:1584735-1584987 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	223 - AAAGGUAGAGUCAGGUAUGAG - 243
Stem-loop(if miRNA)	G       GA    A   CAA   C   C    ------CA     CAAACACAUUACCAUACCAUCUACUACACACAUCUGAC   ----------- AU -          - UUUAACUAAGCCUAGAAGCAUCUUUCACCAACCG  GAUGUGG  UUCA ACU   GAC UCU ACCU        GCUCU                                      UUG           G  A GAGAUGUUUU U                                  A  |||||||  |||| |||   ||| ||| ||||        |||||                                      |||           |  | |||||||||| |                                  U  UUGCAUC  GAGU UGG   CUG AGA UGGA        CGGGA                                      GCU           U  A AAAUCAGAUC A                                  A A       UC    A   --A   -   -    AACAUAUA     -----------------------AUCUUACACAUCCAA   UAACAUCUUCU -- A          C ACCACAAUGGUUGAUCUUGAUUUCUAUAAAAAUC
Stem-loop sequence	GGAUGUGGGAUUCAAACUCAAGACCUCUCACCUCAGCUCUCAAACACAUUACCAUACCAUCUACUACACACAUCUGACUUGGAUAGAGAUGUUUUUUUUAACUAAGCCUAGAAGCAUCUUUCACCAACCGAUACUAAAAAUAUCUUUAGUUCUAGUUGGUAACACCAACCUAGACUAAAAAUUCUUCUACAAUUCGAACCUACACAUUCUAAGGGCAUAUACAAAGGUAGAGUCAGGUAUGAGCUCUACGUUA

Reference

1	PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011).