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BaseInfo

ncRNA ID osa-miR1846a-5p
Species Oryza sativa
Class miRNA
Genome position Chr10:529274-529385 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 33 - AGUGAGGAGGCCGGGGCCGCU - 53
Stem-loop(if miRNA) -C  C   CUACCAAU    C         C  A        GC     C     G
  CG UCC        GAGC GCCGGAUCU CC GUGAGGAG  CGGGG CGCUG A
  || |||        |||| ||||||||| || ||||||||  ||||| |||||
  GC AGG        CUCG CGGCCUAGG GG CGCUCCUC  GCCCC GUGGC U
GA  A   AAAGAGAC    -         C  C        UU     A     C
Stem-loop sequence CCGCUCCCUACCAAUGAGCCGCCGGAUCUCCCAGUGAGGAGGCCGGGGCCGCUGGAUCCGGUGACCCCGUUCUCCUCGCCGGCGGAUCCGGCGCUCCAGAGAAAGGAACGAG

Reference

1 PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains";
Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C;
Genome Res. 18:1456-1465(2008).
2 PMID:19103661
"Characterization and expression profiles of miRNAs in rice seeds";
Xue LJ, Zhang JJ, Xue HW;
Nucleic Acids Res. 37:916-930(2009).