| ncRNA ID | osa-miR5076 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr1:43208622-43208850 [-] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 22 |
| Mature sequence(if miRNA) | 11 - GAAAUGGGAGCAGAGCAGGUUU - 32 |
| Stem-loop(if miRNA) |
C -GAUCCC U A AU - -UUCA UAC U UA ---U A --UA G - C UU CCA UU AUCU AGCCU CU UUGCUUU UUUC AGUCAA UC UUG G AGAAGAG AGAGUUUGAGU UC GCA GGU UGAGUAUA AU G AAUAAU U |||| ||||| || ||||||| |||| |||||| || ||| | ||||||| ||||||||||| || ||| ||| |||||||| || | |||||| UAGA UUGGA GA GACGAGG AAAG UCAGUU AG GAC C UCUUUUC UUUUAAGCUUA AG CGU UCA AUUUAUAU UA C UUAUUG G - AAAAAGU C - GU C CUCUC UAC - UC CAGU - UAAC A U C UU AAG UC |
| Stem-loop sequence | CAUCUGAUCCCAGCCUUCUAUUGCUUUAUUUUCAGUCAAUUCAUCUACUUGUGUAAGAAGAGUAGAGUUUGAGUAUCUAGCAGGGUUGAGUAUACAUUUGCCAAAUAAUUUUGCUGUUAUUGAACUUAUCUAUAUUUAUACUAUGCCAAUGAAUUCGAAUUUUUGACCUUUUCUCUCCAGCAUGACUCUCUUGACUCGAAAUGGGAGCAGAGCAGGUUUGAAAAAAGAU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AK111537.1 |
|
2.5 | Oryza sativa Japonica Group cDNA clone:J013041C09, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| XM_015770848.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group E2F transcription factor-like E2FE (LOC4330674), mRNA | E2F transcription factor-like E2FE(LOC4330674) | coding protein | psRNATarget | |||||||||
| XM_015757995.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group cytochrome P450 76C2 (LOC4348095), mRNA | cytochrome P450 76C2(LOC4348095) | coding protein | psRNATarget |
| 1 | PMID:21352554
"Discovery of barley miRNAs through deep sequencing of short reads"; Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U; BMC Genomics. 12:129(2011). |