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BaseInfo

ncRNA ID osa-miR172b
Species Oryza sativa
Class miRNA
Genome position Chr1:42923736-42923973 [-]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - GGAAUCUUGAUGAUGCUGCAU - 31
Stem-loop(if miRNA) G          C UG               --      UACAU       -------A      UGUCUAUGCAUCUUUGAGCUUGUUGUUCUGAUCUCAACAACCUAGCUAGCUAAUAUUU
 UGAUUUCUGA G  GCAUCAUCAAGAUUC  ACACAU     UGCAUGC        UGCAUA                                                          C
 |||||||||| |  |||||||||||||||  ||||||     |||||||        ||||||                                                          U
 AUUAAAGGCU C  CGUAGUAGUUCUAAG  UGUGUA     GUGUACG        UCGAAG                                                          C
A          A GU               GG      UAUAU       CAAAUUAA      CUAGAGAGAGAAGAGAGAGGUACGCACGUUGGUACGUAGUACGUCCAGUCCCGGUCCU
Stem-loop sequence GUGAUUUCUGACGUGGCAUCAUCAAGAUUCACACAUUACAUUGCAUGCAUGCAUAUGUCUAUGCAUCUUUGAGCUUGUUGUUCUGAUCUCAACAACCUAGCUAGCUAAUAUUUCUCUCCUGGCCCUGACCUGCAUGAUGCAUGGUUGCACGCAUGGAGAGAGAAGAGAGAGAUCGAAGCUAAUUAAACGCAUGUGUAUAUAUGUGUGGGAAUCUUGAUGAUGCUGCAUCGGAAAUUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015787226.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=||||||
targets:1355   CUGCAGCAUCAUCAGGAUUCC   1375

1.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor RAP2-7 (LOC9271266), transcript variant X2, mRNA ethylene-responsive transcription factor RAP2-7(LOC9271266) coding protein psRNATarget
XM_015787225.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=||||||
targets:1411   CUGCAGCAUCAUCAGGAUUCC   1431

1.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor RAP2-7 (LOC9271266), transcript variant X1, mRNA ethylene-responsive transcription factor RAP2-7(LOC9271266) coding protein psRNATarget
AK242957.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=||||||
targets:1481   CUGCAGCAUCAUCAGGAUUCC   1501

1.5 Oryza sativa Japonica Group cDNA, clone: J090089I15, full insert sequence NA coding protein psRNATarget
EF576372.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:392   CUGCAGCAUCAUCAGGAUUCU   412

2.5 Oryza sativa (indica cultivar-group) clone OSS-97-192-D5 transcription factor ap2d23-like protein mRNA, partial cds NA coding protein psRNATarget
CT835249.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:358   CUGCAGCAUCAUCAGGAUUCU   378

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN030P21, full insert sequence NA coding protein psRNATarget
CT836468.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:658   CUGCAGCAUCAUCAGGAUUCU   678

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN050I21, full insert sequence NA coding protein psRNATarget
AY685113.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1193   CUGCAGCAUCAUCAGGAUUCU   1213

2.5 Oryza sativa (japonica cultivar-group) transcription factor AP2D2 (AP2D2) mRNA, complete cds NA coding protein psRNATarget
CT828346.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1183   CUGCAGCAUCAUCAGGAUUCU   1203

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA215G24, full insert sequence NA coding protein psRNATarget
AY685117.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1412   CUGCAGCAUCAUCAGGAUUCU   1432

2.5 Oryza sativa (japonica cultivar-group) transcription factor AP2D23-like (AP2D23) mRNA, complete cds NA coding protein psRNATarget
DQ374663.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1204   CUGCAGCAUCAUCAGGAUUCU   1224

2.5 Oryza sativa (japonica cultivar-group) supernumerary bract mRNA, complete cds NA coding protein psRNATarget
XM_015792406.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1305   CUGCAGCAUCAUCAGGAUUCU   1325

2.5 PREDICTED: Oryza sativa Japonica Group AP2-like ethylene-responsive transcription factor TOE3 (LOC4342787), transcript variant X3, mRNA AP2-like ethylene-responsive transcription factor TOE3(LOC4342787) coding protein psRNATarget
AK111874.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1403   CUGCAGCAUCAUCAGGAUUCU   1423

2.5 Oryza sativa Japonica Group cDNA clone:J033046C12, full insert sequence NA coding protein psRNATarget
XM_015772884.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1750   CUGCAGCAUCAUCAGGAUUCU   1770

2.5 PREDICTED: Oryza sativa Japonica Group AP2-like ethylene-responsive transcription factor TOE3 (LOC4334582), transcript variant X2, mRNA AP2-like ethylene-responsive transcription factor TOE3(LOC4334582) coding protein psRNATarget
CT836522.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1756   CUGCAGCAUCAUCAGGAUUCU   1776

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA250P08, full insert sequence NA coding protein psRNATarget
XM_015772883.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1762   CUGCAGCAUCAUCAGGAUUCU   1782

2.5 PREDICTED: Oryza sativa Japonica Group AP2-like ethylene-responsive transcription factor TOE3 (LOC4334582), transcript variant X1, mRNA AP2-like ethylene-responsive transcription factor TOE3(LOC4334582) coding protein psRNATarget
CT831975.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1463   CUGCAGCAUCAUCAGGAUUCU   1483

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA106E13, full insert sequence NA coding protein psRNATarget
XM_015783844.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1926   CUGCAGCAUCAUCAGGAUUCU   1946

2.5 PREDICTED: Oryza sativa Japonica Group AP2-like ethylene-responsive transcription factor TOE3 (LOC4337654), transcript variant X2, mRNA AP2-like ethylene-responsive transcription factor TOE3(LOC4337654) coding protein psRNATarget
XM_015783843.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1971   CUGCAGCAUCAUCAGGAUUCU   1991

2.5 PREDICTED: Oryza sativa Japonica Group AP2-like ethylene-responsive transcription factor TOE3 (LOC4337654), transcript variant X1, mRNA AP2-like ethylene-responsive transcription factor TOE3(LOC4337654) coding protein psRNATarget
XM_015792405.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1403   CUGCAGCAUCAUCAGGAUUCU   1423

2.5 PREDICTED: Oryza sativa Japonica Group AP2-like ethylene-responsive transcription factor TOE3 (LOC4342787), transcript variant X1, mRNA AP2-like ethylene-responsive transcription factor TOE3(LOC4342787) coding protein psRNATarget
AK121346.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||*||||||
targets:804   CUGCAGCAUCAUCACGAUUCC   824

1.5 Oryza sativa Japonica Group cDNA clone:J023121E19, full insert sequence NA coding protein psRNATarget
AK099991.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||*||||||
targets:2390   CUGCAGCAUCAUCACGAUUCC   2410

1.5 Oryza sativa Japonica Group cDNA clone:J013131A17, full insert sequence NA coding protein psRNATarget
XM_015781362.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||*||||||
targets:1863   CUGCAGCAUCAUCACGAUUCC   1883

1.5 PREDICTED: Oryza sativa Japonica Group AP2-like ethylene-responsive transcription factor TOE3 (LOC9269072), transcript variant X1, mRNA AP2-like ethylene-responsive transcription factor TOE3(LOC9269072) coding protein psRNATarget
XM_015781363.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||*||||||
targets:1865   CUGCAGCAUCAUCACGAUUCC   1885

1.5 PREDICTED: Oryza sativa Japonica Group AP2-like ethylene-responsive transcription factor TOE3 (LOC9269072), transcript variant X2, mRNA AP2-like ethylene-responsive transcription factor TOE3(LOC9269072) coding protein psRNATarget
XM_015782948.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  |*|||*=||||||||||||||
targets:385   AAGCAUUAUCAUCAAGAUUCC   405

2.0 PREDICTED: Oryza sativa Japonica Group 65-kDa microtubule-associated protein 1-like (LOC107276112), transcript variant X2, mRNA 65-kDa microtubule-associated protein 1-like(LOC107276112) coding protein psRNATarget
XM_015782947.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  |*|||*=||||||||||||||
targets:385   AAGCAUUAUCAUCAAGAUUCC   405

2.0 PREDICTED: Oryza sativa Japonica Group 65-kDa microtubule-associated protein 1-like (LOC107276112), transcript variant X1, mRNA 65-kDa microtubule-associated protein 1-like(LOC107276112) coding protein psRNATarget
XM_015782949.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  |*|||*=||||||||||||||
targets:553   AAGCAUUAUCAUCAAGAUUCC   573

2.0 PREDICTED: Oryza sativa Japonica Group 65-kDa microtubule-associated protein 1-like (LOC107276112), transcript variant X3, mRNA 65-kDa microtubule-associated protein 1-like(LOC107276112) coding protein psRNATarget
XM_015782950.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  |*|||*=||||||||||||||
targets:603   AAGCAUUAUCAUCAAGAUUCC   623

2.0 PREDICTED: Oryza sativa Japonica Group 65-kDa microtubule-associated protein 1-like (LOC107276112), transcript variant X4, mRNA 65-kDa microtubule-associated protein 1-like(LOC107276112) coding protein psRNATarget

Reference

1 PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA";
Jones-Rhoades MW, Bartel DP;
Mol Cell. 14:787-799(2004).
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