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BaseInfo

ncRNA ID osa-miR5145
Species Oryza sativa
Class miRNA
Genome position Chr1:40622637-40622718 [-]
Reference genome MSU7
Source miRBase
Length 24
Mature sequence(if miRNA) 57 - ACCUGUUUGGAUUCUUGAGGGCUA - 80
Stem-loop(if miRNA) --CCA         A    UGA        UUAAAAUUAAAAU  G
     CCUGUUUGG UUCU   GGGCUAAU             GU A
     ||||||||| ||||   ||||||||             ||
     GGACAAACC AAGA   CCUGAUUA             CG G
CGCCG         -    -UA        --------CAAAU  A
Stem-loop sequence CCACCUGUUUGGAUUCUUGAGGGCUAAUUUAAAAUUAAAAUGUGAGAGCUAAACAUUAGUCCAUAGAACCAAACAGGGCCGC

Reference

1 PMID:21525786
"Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus";
Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D;
RNA Biol. 8:538-547(2011).