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BaseInfo

ncRNA ID osa-miR1846d-3p
Species Oryza sativa
Class miRNA
Genome position Chr1:39637065-39637180 [+]
Reference genome MSU7
Source miRBase
Length 20
Mature sequence(if miRNA) 87 - UAUCCGGCGCCGCAGGGAGG - 106
Stem-loop(if miRNA) U  -  -         AC  A  A       CU -  A     U     C   C    AG
 GC CU GUCCCUCCC  CG GC GCCGGAU  C CC GUGAG AGGCC GGG CGCC  A
 || || |||||||||  || || |||||||  | || ||||| ||||| ||| ||||
 CG GA CAGGGAGGG  GC CG CGGCCUA  G GG CGCUC UCUGG CCC GUGG  U
C  A  G         AC  -  -       -U U  C     C     C   A    CC
Stem-loop sequence UGCCUGUCCCUCCCACCGAGCAGCCGGAUCUCCCAGUGAGUAGGCCCGGGCCGCCAGAUCCGGUGACCCCGGUCUCCUCGCCGGUGUAUCCGGCGCCGCAGGGAGGGACGAGAGCC

Reference

1 PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains";
Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C;
Genome Res. 18:1456-1465(2008).