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BaseInfo

ncRNA ID	osa-miR5819
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:29695842-29695904 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - AGGACGAGGGGAACGGCGGCG - 31
Stem-loop(if miRNA)	U     U A  G      G  AA     G   U  GGCAA G GA GACGAG GG  CGGCG CGG G  ||||| | || |||||| ||  ||||| |||  CCGUU C CU CUGCUC UC  GUCGC GCC G U     - -  G      G  --     -   C
Stem-loop sequence	UGGCAAUGAGAGGACGAGGGGAACGGCGGCGGUGGCCCGCGCUGCUGCUCGUCGUCCUUGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK121565.1	ncRNA:21   GCGGCGGCAAGGGGAGCAGGA   1   |||||*||||||||||||||| targets:388   CGCCGGCGUUCCCCUCGUCCU   408 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J033034M12, full insert sequence	NA	coding protein	psRNATarget
XM_015778193.1	ncRNA:21   GCGGCGGCAAGGGGAGCAGGA   1   |*||||||*|||||||||||| targets:564   CACCGCCGCUCCCCUCGUCCU   584 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable L-type lectin-domain containing receptor kinase S.5 (LOC9267582), transcript variant X2, mRNA	probable L-type lectin-domain containing receptor kinase S.5(LOC9267582)	coding protein	psRNATarget

Reference

1	PMID:22158467 "Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011).