| ncRNA ID | osa-miR319a-3p |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr1:26823282-26823472 [-] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 55 - ACUGGAUGACGCGGGAGCUAA - 75 |
| Stem-loop(if miRNA) |
--- U AA A U CU U U --UUA G AA U AC AAGU G UG GUAAG G GAGC CUCUUCAGUCCA C CAGAUGGC GUAGGGUU UUAGCU CCG UCAUCCA UC CUACCAAGA UGCA G || ||||| | |||| |||||||||||| | |||||||| |||||||| |||||| ||| ||||||| || ||||||||| |||| AC CGUUC C CUCG GGGAAGUCAGGU G GUUUGCCG CGUCUCGA AAUCGA GGC AGUAGGU AG GAUGGUUCU AUGU A CGA U -- - U UG U - UUUAA G GC C GC --CU G |
| Stem-loop sequence | UGUGUAAGAAGAGAGCUCUCUUCAGUCCACUCUCAGAUGGCUGUAGGGUUUUAUUAGCUGCCGAAUCAUCCAUUCACCUACCAAGAAAGUUGCAGGAGUGUAUCUCUUGGUAGCGGACUGGAUGACGCGGGAGCUAAAAUUUAGCUCUGCGCCGUUUGUGGUUGGACUGAAGGGUGCUCCCUUGCUCAAGC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_015772842.1 |
|
2.0 | PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333009), mRNA | metacaspase-1(LOC4333009) | coding protein | psRNATarget | |||||||||
| AK243542.1 |
|
2.0 | Oryza sativa Japonica Group cDNA, clone: J100078J12, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| CT835190.1 |
|
2.0 | Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA118C23, full insert sequence | NA | coding protein | psRNATarget |
| 1 | PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004). |
| 2 | PMID:21525786
"Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus"; Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D; RNA Biol. 8:538-547(2011). |