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BaseInfo

ncRNA ID osa-miR319a-5p
Species Oryza sativa
Class miRNA
Genome position Chr1:26823282-26823472 [-]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 116 - AGCUGCCGAAUCAUCCAUUCA - 136
Stem-loop(if miRNA) ---  U     AA A    U            CU U        U        --UUA      G   AA       U  AC         AAGU    G
   UG GUAAG  G GAGC CUCUUCAGUCCA  C CAGAUGGC GUAGGGUU     UUAGCU CCG  UCAUCCA UC  CUACCAAGA    UGCA G
   || |||||  | |||| ||||||||||||  | |||||||| ||||||||     |||||| |||  ||||||| ||  |||||||||    ||||
   AC CGUUC  C CUCG GGGAAGUCAGGU  G GUUUGCCG CGUCUCGA     AAUCGA GGC  AGUAGGU AG  GAUGGUUCU    AUGU A
CGA  U     -- -    U            UG U        -        UUUAA      G   GC       C  GC         --CU    G
Stem-loop sequence UGUGUAAGAAGAGAGCUCUCUUCAGUCCACUCUCAGAUGGCUGUAGGGUUUUAUUAGCUGCCGAAUCAUCCAUUCACCUACCAAGAAAGUUGCAGGAGUGUAUCUCUUGGUAGCGGACUGGAUGACGCGGGAGCUAAAAUUUAGCUCUGCGCCGUUUGUGGUUGGACUGAAGGGUGCUCCCUUGCUCAAGC

Reference

1 PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA";
Jones-Rhoades MW, Bartel DP;
Mol Cell. 14:787-799(2004).
2 PMID:21525786
"Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus";
Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D;
RNA Biol. 8:538-547(2011).