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BaseInfo

ncRNA ID	osa-miR319a-3p.2-3p
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:26823282-26823472 [-]
Reference genome	MSU7
Source	miRBase
Length	20
Mature sequence(if miRNA)	11 - UUGGACUGAAGGGUGCUCCC - 30
Stem-loop(if miRNA)	---  U     AA A    U            CU U        U        --UUA      G   AA       U  AC         AAGU    G    UG GUAAG  G GAGC CUCUUCAGUCCA  C CAGAUGGC GUAGGGUU     UUAGCU CCG  UCAUCCA UC  CUACCAAGA    UGCA G    || |||||  | |||| ||||||||||||  | |||||||| ||||||||     |||||| |||  ||||||| ||  |||||||||    ||||    AC CGUUC  C CUCG GGGAAGUCAGGU  G GUUUGCCG CGUCUCGA     AAUCGA GGC  AGUAGGU AG  GAUGGUUCU    AUGU A CGA  U     -- -    U            UG U        -        UUUAA      G   GC       C  GC         --CU    G
Stem-loop sequence	UGUGUAAGAAGAGAGCUCUCUUCAGUCCACUCUCAGAUGGCUGUAGGGUUUUAUUAGCUGCCGAAUCAUCCAUUCACCUACCAAGAAAGUUGCAGGAGUGUAUCUCUUGGUAGCGGACUGGAUGACGCGGGAGCUAAAAUUUAGCUCUGCGCCGUUUGUGGUUGGACUGAAGGGUGCUCCCUUGCUCAAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK106830.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *||=||||*||||||||||| targets:626   CGGGGCACACUUCAGUCCAA   645 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-116-F07, full insert sequence	NA	coding protein	psRNATarget
AB071808.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *||=||||*||||||||||| targets:817   CGGGGCACACUUCAGUCCAA   836 Target Full Sequence	2.5	Oryza sativa Japonica Group mRNA for transcription factor PCF8, partial cds	NA	coding protein	psRNATarget
XM_015763846.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *||=||||*||||||||||| targets:910   CGGGGCACACUUCAGUCCAA   929 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transcription factor PCF8 (LOC4352799), mRNA	transcription factor PCF8(LOC4352799)	coding protein	psRNATarget
AK119607.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *|||||*|||||||*||||| targets:1260   UGGAGCUCCCUUCACUCCAA   1279 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-117-F06, full insert sequence	NA	coding protein	psRNATarget
CT830881.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *|||||*|||||||*||||| targets:1182   UGGAGCUCCCUUCACUCCAA   1201 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA206M18, full insert sequence	NA	coding protein	psRNATarget
CT830884.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *|||||*|||||||*||||| targets:1258   UGGAGCUCCCUUCACUCCAA   1277 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA248K02, full insert sequence	NA	coding protein	psRNATarget
XM_015766850.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *|||||*|||||||*||||| targets:1279   UGGAGCUCCCUUCACUCCAA   1298 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transcription factor GAMYB (LOC4327362), transcript variant X2, mRNA	transcription factor GAMYB(LOC4327362)	coding protein	psRNATarget
CT830883.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *|||||*|||||||*||||| targets:1258   UGGAGCUCCCUUCACUCCAA   1277 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA248F23, full insert sequence	NA	coding protein	psRNATarget
AK102841.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *|||||*|||||||*||||| targets:1259   UGGAGCUCCCUUCACUCCAA   1278 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033109N02, full insert sequence	NA	coding protein	psRNATarget
CT830882.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *|||||*|||||||*||||| targets:1260   UGGAGCUCCCUUCACUCCAA   1279 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA246D08, full insert sequence	NA	coding protein	psRNATarget
X98355.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *|||||*|||||||*||||| targets:1351   UGGAGCUCCCUUCACUCCAA   1370 Target Full Sequence	2.5	O.sativa mRNA for transcription activator, GAMyb	NA	coding protein	psRNATarget
AK063951.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *|||||*|||||||*||||| targets:1257   UGGAGCUCCCUUCACUCCAA   1276 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-123-F05, full insert sequence	NA	coding protein	psRNATarget
XM_015766849.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *|||||*|||||||*||||| targets:1348   UGGAGCUCCCUUCACUCCAA   1367 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transcription factor GAMYB (LOC4327362), transcript variant X1, mRNA	transcription factor GAMYB(LOC4327362)	coding protein	psRNATarget

Reference

1	PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004).
2	PMID:21525786 "Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus"; Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D; RNA Biol. 8:538-547(2011).