ncRNA ID | osa-miR7692-3p |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr1:26250161-26250558 [+] |
Reference genome | MSU7 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 314 - UGACUUGGCAUGCUUACGUGGCAC - 337 |
Stem-loop(if miRNA) |
  U           C                                        -                                  A    C                             C          CC                  -------------------------------------AA   ---   AAAUGUUUUCACAC CG CCAAACAAGUC UCCAAAUUAAUUAUUUGGGUUAAUAUAGUUCUUGGAUCCA AAAAAGUGCCACGUGAGCAUGCCAAGUCAUCCUC CAUG AGCGGUAUGAAUGAAAUGACCAUUCUACC UUAUAUACCA  UAGAAAAGAAAGAAAAAA                                       GAA   GAU              G || ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||                                       |||   |||              U GC GGUUUGUUCAG AGGUUUAAUUAGUAAACCCAAUUAUAUCAGGAAUCUGGGU UUUUUCACGGUGCAUUCGUACGGUUCAGUAGGAG GUAC UCGCCAUACUUACUUUACUGGUAAGAUGG AAUAUAUGGU  AUUUUUUCUUUCUUUUUU                                       CAC   UAA              G   U           U                                        G                                  C    A                             A          AU                  GUGUUUGUCUUUUUUUAUUGUCCGGUCGUUGUUAGCAUU   UGU   GAUUUUGCUUGUAU |
Stem-loop sequence | CGUCCAAACAAGUCCUCCAAAUUAAUUAUUUGGGUUAAUAUAGUUCUUGGAUCCAAAAAAGUGCCACGUGAGCAUGCCAAGUCAUCCUCACAUGCAGCGGUAUGAAUGAAAUGACCAUUCUACCCUUAUAUACCACCUAGAAAAGAAAGAAAAAAAAGAAGAUAAAUGUUUUCACACGUGUAUGUUCGUUUUAGAAUUGUCACUUACGAUUGUUGCUGGCCUGUUAUUUUUUUCUGUUUGUGUUUUUUCUUUCUUUUUUAUAUGGUAUAUAAAGGUAGAAUGGUCAUUUCAUUCAUACCGCUACAUGCGAGGAUGACUUGGCAUGCUUACGUGGCACUUUUUGUGGGUCUAAGGACUAUAUUAACCCAAAUGAUUAAUUUGGAUGACUUGUUUGGUCG |
1 | PMID:23627500
"Identification of a novel microRNA (miRNA) from rice that targets an alternatively spliced transcript of the Nramp6 (Natural resistance-associated macrophage protein 6) gene involved in pathogen resistance"; Campo S, Peris-Peris C, Sire C, Moreno AB, Donaire L, Zytnicki M, Notredame C, Llave C, San Segundo B; New Phytol. 199:212-227(2013). |