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BaseInfo

ncRNA ID osa-miR7692-3p
Species Oryza sativa
Class miRNA
Genome position Chr1:26250161-26250558 [+]
Reference genome MSU7
Source miRBase
Length 24
Mature sequence(if miRNA) 314 - UGACUUGGCAUGCUUACGUGGCAC - 337
Stem-loop(if miRNA)   U           C                                        -                                  A    C                             C          CC                  -------------------------------------AA   ---   AAAUGUUUUCACAC
CG CCAAACAAGUC UCCAAAUUAAUUAUUUGGGUUAAUAUAGUUCUUGGAUCCA AAAAAGUGCCACGUGAGCAUGCCAAGUCAUCCUC CAUG AGCGGUAUGAAUGAAAUGACCAUUCUACC UUAUAUACCA  UAGAAAAGAAAGAAAAAA                                       GAA   GAU              G
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||                                       |||   |||              U
GC GGUUUGUUCAG AGGUUUAAUUAGUAAACCCAAUUAUAUCAGGAAUCUGGGU UUUUUCACGGUGCAUUCGUACGGUUCAGUAGGAG GUAC UCGCCAUACUUACUUUACUGGUAAGAUGG AAUAUAUGGU  AUUUUUUCUUUCUUUUUU                                       CAC   UAA              G
  U           U                                        G                                  C    A                             A          AU                  GUGUUUGUCUUUUUUUAUUGUCCGGUCGUUGUUAGCAUU   UGU   GAUUUUGCUUGUAU
Stem-loop sequence CGUCCAAACAAGUCCUCCAAAUUAAUUAUUUGGGUUAAUAUAGUUCUUGGAUCCAAAAAAGUGCCACGUGAGCAUGCCAAGUCAUCCUCACAUGCAGCGGUAUGAAUGAAAUGACCAUUCUACCCUUAUAUACCACCUAGAAAAGAAAGAAAAAAAAGAAGAUAAAUGUUUUCACACGUGUAUGUUCGUUUUAGAAUUGUCACUUACGAUUGUUGCUGGCCUGUUAUUUUUUUCUGUUUGUGUUUUUUCUUUCUUUUUUAUAUGGUAUAUAAAGGUAGAAUGGUCAUUUCAUUCAUACCGCUACAUGCGAGGAUGACUUGGCAUGCUUACGUGGCACUUUUUGUGGGUCUAAGGACUAUAUUAACCCAAAUGAUUAAUUUGGAUGACUUGUUUGGUCG

Reference

1 PMID:23627500
"Identification of a novel microRNA (miRNA) from rice that targets an alternatively spliced transcript of the Nramp6 (Natural resistance-associated macrophage protein 6) gene involved in pathogen resistance";
Campo S, Peris-Peris C, Sire C, Moreno AB, Donaire L, Zytnicki M, Notredame C, Llave C, San Segundo B;
New Phytol. 199:212-227(2013).