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BaseInfo

ncRNA ID	osa-miR7692-5p
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:26250161-26250558 [+]
Reference genome	MSU7
Source	miRBase
Length	24
Mature sequence(if miRNA)	50 - GAUCCAAAAAAGUGCCACGUGAGC - 73
Stem-loop(if miRNA)	U           C                                        -                                  A    C                             C          CC                  -------------------------------------AA   ---   AAAUGUUUUCACAC CG CCAAACAAGUC UCCAAAUUAAUUAUUUGGGUUAAUAUAGUUCUUGGAUCCA AAAAAGUGCCACGUGAGCAUGCCAAGUCAUCCUC CAUG AGCGGUAUGAAUGAAAUGACCAUUCUACC UUAUAUACCA  UAGAAAAGAAAGAAAAAA                                       GAA   GAU              G || ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||                                       |||   |||              U GC GGUUUGUUCAG AGGUUUAAUUAGUAAACCCAAUUAUAUCAGGAAUCUGGGU UUUUUCACGGUGCAUUCGUACGGUUCAGUAGGAG GUAC UCGCCAUACUUACUUUACUGGUAAGAUGG AAUAUAUGGU  AUUUUUUCUUUCUUUUUU                                       CAC   UAA              G   U           U                                        G                                  C    A                             A          AU                  GUGUUUGUCUUUUUUUAUUGUCCGGUCGUUGUUAGCAUU   UGU   GAUUUUGCUUGUAU
Stem-loop sequence	CGUCCAAACAAGUCCUCCAAAUUAAUUAUUUGGGUUAAUAUAGUUCUUGGAUCCAAAAAAGUGCCACGUGAGCAUGCCAAGUCAUCCUCACAUGCAGCGGUAUGAAUGAAAUGACCAUUCUACCCUUAUAUACCACCUAGAAAAGAAAGAAAAAAAAGAAGAUAAAUGUUUUCACACGUGUAUGUUCGUUUUAGAAUUGUCACUUACGAUUGUUGCUGGCCUGUUAUUUUUUUCUGUUUGUGUUUUUUCUUUCUUUUUUAUAUGGUAUAUAAAGGUAGAAUGGUCAUUUCAUUCAUACCGCUACAUGCGAGGAUGACUUGGCAUGCUUACGUGGCACUUUUUGUGGGUCUAAGGACUAUAUUAACCCAAAUGAUUAAUUUGGAUGACUUGUUUGGUCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KM822904.1	ncRNA:24   CGAG----UGCACCGUGAAAAAACCUAG   1   *|||----|*||||=||||||||||||* targets:2902   CCUCCUGAAGGUGGUACUUUUUUGGAUG   2929 Target Full Sequence	3.0	Oryza sativa structural maintenance of chromosomes protein 2 mRNA, partial cds	NA	coding protein	psRNATarget
AJ535210.1	ncRNA:24   CGAG----UGCACCGUGAAAAAACCUAG   1   *|||----|*||||=||||||||||||* targets:3166   CCUCCUGAAGGUGGUACUUUUUUGGAUG   3193 Target Full Sequence	3.0	Oryza sativa mRNA for SMC2 protein	NA	coding protein	psRNATarget
AK103514.1	ncRNA:24   CGAG----UGCACCGUGAAAAAACCUAG   1   *|||----|*||||=||||||||||||* targets:3291   CCUCCUGAAGGUGGUACUUUUUUGGAUG   3318 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J033131G15, full insert sequence	NA	coding protein	psRNATarget
XM_015765404.1	ncRNA:24   CGAG----UGCACCGUGAAAAAACCUAG   1   *|||----|*||||=||||||||||||* targets:3285   CCUCCUGAAGGUGGUACUUUUUUGGAUG   3312 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group structural maintenance of chromosomes protein 2-1 (LOC4325020), mRNA	structural maintenance of chromosomes protein 2-1(LOC4325020)	coding protein	psRNATarget

Reference

1

PMID:23627500 "Identification of a novel microRNA (miRNA) from rice that targets an alternatively spliced transcript of the Nramp6 (Natural resistance-associated macrophage protein 6) gene involved in pathogen resistance"; Campo S, Peris-Peris C, Sire C, Moreno AB, Donaire L, Zytnicki M, Notredame C, Llave C, San Segundo B; New Phytol. 199:212-227(2013).