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BaseInfo

ncRNA ID	osa-miR2925
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:25801058-25801177 [+]
Reference genome	MSU7
Source	miRBase
Length	19
Mature sequence(if miRNA)	17 - UGGCGGCCGCGGGCUUCGU - 35
Stem-loop(if miRNA)	UU   - AC    -  CUUGGCGGCCGCGGGCUUCGUCGCCGUCUCACUGAGCUUGGCAGC   CUU G  GCCG CC                                             C   ||| |  |||| ||                                             G   UCG A  GUCU CU                                             G -U   U --    U  UACCGAAGAGACUUCCGGCACUUUGGACGGCCUGAACGGUUCCUC
Stem-loop sequence	UUCUUGACGCCGCCCUUGGCGGCCGCGGGCUUCGUCGCCGUCUCACUGAGCUUGGCAGCCGGCUCCUUGGCAAGUCCGGCAGGUUUCACGGCCUUCAGAGAAGCCAUUCUUCUGAUGCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK105174.1	ncRNA:19   UGCUUCGGGCGCCGGCGGU   1   ||||||||||||||||||| targets:152   ACGAAGCCCGCGGCCGCCA   170 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:001-104-H01, full insert sequence	NA	coding protein	psRNATarget
AK071521.1	ncRNA:19   UGCUUCGGGCGCCGGCGGU   1   ||||||||||||||||||| targets:153   ACGAAGCCCGCGGCCGCCA   171 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J023099A13, full insert sequence	NA	coding protein	psRNATarget
CT837958.1	ncRNA:19   UGCUUCGGGCGCCGGCGGU   1   =|||=|||||||||||||= targets:603   GCGAGGCCCGCGGCCGCCG   621 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA022F02, full insert sequence	NA	coding protein	psRNATarget
XM_015773331.1	ncRNA:19   UGCUUCGGGCGCCGGCGGU   1   =|||=|||||||||||||= targets:564   GCGAGGCCCGCGGCCGCCG   582 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group probable GABA transporter 2 (LOC4326627), mRNA	probable GABA transporter 2(LOC4326627)	coding protein	psRNATarget
XM_015767936.1	ncRNA:19   UGCUUCGGGCGCCGGCGGU   1   ||||*||||||||||||=| targets:877   ACGACGCCCGCGGCCGCUA   895 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cinnamoyl-CoA reductase 1 (LOC4331102), transcript variant X1, mRNA	cinnamoyl-CoA reductase 1(LOC4331102)	coding protein	psRNATarget
XM_015775617.1	ncRNA:19   UGCUUCGGGCGCCGGCGGU   1   |=|=*|||||||||||||| targets:100   AUGGCGCCCGCGGCCGCCA   118 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group WD repeat-containing protein 43 (LOC4332567), mRNA	WD repeat-containing protein 43(LOC4332567)	coding protein	psRNATarget
AK099693.1	ncRNA:19   UGCUUCGGGCGCCGGCGGU   1   |=|=*|||||||||||||| targets:87   AUGGCGCCCGCGGCCGCCA   105 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013074C22, full insert sequence	NA	coding protein	psRNATarget
XM_015792630.1	ncRNA:19   UGCUUCGGGCGCCGGCGGU   1   *|*|||||||||||||||= targets:416   CCCAAGCCCGCGGCCGCCG   434 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group BUD13 homolog (LOC4344809), transcript variant X1, mRNA	BUD13 homolog(LOC4344809)	coding protein	psRNATarget
XM_015792631.1	ncRNA:19   UGCUUCGGGCGCCGGCGGU   1   *|*|||||||||||||||= targets:409   CCCAAGCCCGCGGCCGCCG   427 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group BUD13 homolog (LOC4344809), transcript variant X2, mRNA	BUD13 homolog(LOC4344809)	coding protein	psRNATarget
AK068383.1	ncRNA:19   UGCUUCGGGCGCCGGCGGU   1   *|*|||||||||||||||= targets:419   CCCAAGCCCGCGGCCGCCG   437 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013147K06, full insert sequence	NA	coding protein	psRNATarget
AK100262.1	ncRNA:19   UGCUUCGGGCGCCGGCGGU   1   *|*|||||||||||||||= targets:404   CCCAAGCCCGCGGCCGCCG   422 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023063G02, full insert sequence	NA	coding protein	psRNATarget
AK241190.1	ncRNA:19   UGCUUCGGGCGCCGGCGGU   1   |*|||||||||*||||||| targets:921   AAGAAGCCCGCCGCCGCCA   939 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065120N14, full insert sequence	NA	coding protein	psRNATarget
XM_015755516.1	ncRNA:19   UGCUUCGGGCGCCGGCGGU   1   |*|||||||||*||||||| targets:1004   AAGAAGCCCGCCGCCGCCA   1022 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group heat stress transcription factor B-4c (LOC4347251), mRNA	heat stress transcription factor B-4c(LOC4347251)	coding protein	psRNATarget

Reference

1	PMID:20131478 "Cloning and validation of novel miRNA from basmati rice indicates cross talk between abiotic and biotic stresses"; Sanan-Mishra N, Kumar V, Sopory SK, Mukherjee SK; Mol Genet Genomics. 282:463-474(2009).