| ncRNA ID | osa-miR5144-5p |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr1:25326388-25326810 [-] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 391 - UUCUUGUGCUGCUGAAGAGAC - 411 |
| Stem-loop(if miRNA) |
A A C G GA CUUCUUCUUCCCAUUGAAGGUCUCGGUCUUCUCCUUCAGCUCCUGCGGCAUGGGACGACGAGGUGGAGCUCGAGUCCUCGAGGAACUUGUGCCGCAUGGGACGCCCACCAAGAAAGCCCCCCUCGUCGCCCCGCCACCGCCACCGCCGCCGCCGA UCCAUAUU UUCUUCUUGUGCUGCUGA GAGACUCACCGACCUC GGCG C CGU A |||||||| |||||||||||||||||| |||||||||||||||| |||| | ||| AGGUAUAA AAGAAGAACACGACGACU CUCUGAGUGGCUGGAG CCGU G GGC C G C C A -U CUUAGCCUGAGAACCAGCAGUAGGAGUAGUAGUAGCCUGCCUCCGUGUAAGAACAACCGGACUUCGCGACCCAAGCCGUGGCCGUCGCGGAGCAGCAGUGACCUUAGCCUGAAAACCGGCAGUAGCCUUAGUCUUAGUCUAAGUCUGAGAACCAA |
| Stem-loop sequence | UCCAUAUUAUUCUUCUUGUGCUGCUGAAGAGACUCACCGACCUCCGGCGGCGACGUCUUCUUCUUCCCAUUGAAGGUCUCGGUCUUCUCCUUCAGCUCCUGCGGCAUGGGACGACGAGGUGGAGCUCGAGUCCUCGAGGAACUUGUGCCGCAUGGGACGCCCACCAAGAAAGCCCCCCUCGUCGCCCCGCCACCGCCACCGCCGCCGCCGAACAACCAAGAGUCUGAAUCUGAUUCUGAUUCCGAUGACGGCCAAAAGUCCGAUUCCAGUGACGACGAGGCGCUGCCGGUGCCGAACCCAGCGCUUCAGGCCAACAAGAAUGUGCCUCCGUCCGAUGAUGAUGAGGAUGACGACCAAGAGUCCGAUUCCGGUGAUGCCCGAGGUCGGUGAGUCUCCUCAGCAGCACAAGAAGAAGAAUAUGGA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AK289045.1 |
|
3.0 | Oryza sativa Japonica Group cDNA, clone: J090092H03, full insert sequence | NA | coding protein | psRNATarget |
| 1 | PMID:21525786
"Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus"; Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D; RNA Biol. 8:538-547(2011). |