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BaseInfo

ncRNA ID osa-miR5815
Species Oryza sativa
Class miRNA
Genome position Chr1:25017304-25017415 [-]
Reference genome MSU7
Source miRBase
Length 24
Mature sequence(if miRNA) 80 - AAUGUUAUGGACACUAGAUGACAU - 103
Stem-loop(if miRNA) -AAUGUAUUAAA    AUG               AGG      GAUGG    A    UU
            UGUU   GACACUAGAUGACAU   GUUGAU     UCUA UAUG  G
            ||||   |||||||||||||||   ||||||     |||| ||||
            ACAA   CUGUGGUUUACUGUG   UAAUUA     AGAU GUAU  U
UUAACUUUGAAA    -AA               ---      ---AA    A    UC
Stem-loop sequence AAUGUAUUAAAUGUUAUGGACACUAGAUGACAUAGGGUUGAUGAUGGUCUAAUAUGUUGUCUUAUGAUAGAAAAUUAAUGUGUCAUUUGGUGUCAAAACAAAAGUUUCAAUU

Reference

1 PMID:22158467
"Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage";
Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ;
Plant Cell. 23:4185-4207(2011).