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BaseInfo

ncRNA ID osa-miR1847.2
Species Oryza sativa
Class miRNA
Genome position Chr1:20332878-20332987 [+]
Reference genome MSU7
Source miRBase
Length 24
Mature sequence(if miRNA) 60 - UGGCCCACAUGUUAGUGCCACAAC - 83
Stem-loop(if miRNA)    CU    A        C                        A         C
AGA  CCCU ACUUUGUG AGUUUGCAGUUGUGGCACUGACAU UGGGCCAGA A
|||  |||| |||||||| |||||||||||||||||||||||| |||||||||
UCU  GGGA UGAAAUAC UCAAACGUCAACACCGUGAUUGUA ACCCGGUUU C
   AG    C        A                        C         A
Stem-loop sequence AGACUCCCUAACUUUGUGCAGUUUGCAGUUGUGGCACUGACAUAUGGGCCAGACACAUUUGGCCCACAUGUUAGUGCCACAACUGCAAACUACAUAAAGUCAGGGGAUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK106328.1
ncRNA:24   CAACACCGUGAUUGUACACCCGGU   1
  |**|*||||||=|||||||||||*
targets:494   GGAGAGGCACUGACAUGUGGGCCC   517

2.5 Oryza sativa Japonica Group cDNA clone:002-101-F04, full insert sequence NA coding protein psRNATarget

Reference

1 PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains";
Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C;
Genome Res. 18:1456-1465(2008).