Search result

BaseInfo

ncRNA ID	osa-miR1847.1
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:20332878-20332987 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	17 - UGCAGUUUGCAGUUGUGGCAC - 37
Stem-loop(if miRNA)	CU    A        C                        A         C AGA  CCCU ACUUUGUG AGUUUGCAGUUGUGGCACUGACAU UGGGCCAGA A |||  |||| |||||||| |||||||||||||||||||||||| ||||||||| UCU  GGGA UGAAAUAC UCAAACGUCAACACCGUGAUUGUA ACCCGGUUU C    AG    C        A                        C         A
Stem-loop sequence	AGACUCCCUAACUUUGUGCAGUUUGCAGUUGUGGCACUGACAUAUGGGCCAGACACAUUUGGCCCACAUGUUAGUGCCACAACUGCAAACUACAUAAAGUCAGGGGAUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015765428.1	ncRNA:21   CACGGUGUUGACGUUUGACGU   1   ||||||||||||||||||*|| targets:3872   GUGCCACAACUGCAAACUACA   3892 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RPM1 (LOC4326180), transcript variant X6, mRNA	disease resistance protein RPM1(LOC4326180)	coding protein	psRNATarget
XM_015765422.1	ncRNA:21   CACGGUGUUGACGUUUGACGU   1   ||||||||||||||||||*|| targets:4063   GUGCCACAACUGCAAACUACA   4083 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RPM1 (LOC4326180), transcript variant X1, mRNA	disease resistance protein RPM1(LOC4326180)	coding protein	psRNATarget
XM_015765423.1	ncRNA:21   CACGGUGUUGACGUUUGACGU   1   ||||||||||||||||||*|| targets:4574   GUGCCACAACUGCAAACUACA   4594 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RPM1 (LOC4326180), transcript variant X2, mRNA	disease resistance protein RPM1(LOC4326180)	coding protein	psRNATarget
XM_015765424.1	ncRNA:21   CACGGUGUUGACGUUUGACGU   1   ||||||||||||||||||*|| targets:4884   GUGCCACAACUGCAAACUACA   4904 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RPM1 (LOC4326180), transcript variant X3, mRNA	disease resistance protein RPM1(LOC4326180)	coding protein	psRNATarget
XM_015782748.1	ncRNA:21   CACGGUGUUGACGUUUGACGU   1   |||*||||||||=|||||||| targets:2892   GUGGCACAACUGUAAACUGCA   2912 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable DNA helicase MCM8 (LOC4339038), transcript variant X1, mRNA	probable DNA helicase MCM8(LOC4339038)	coding protein	psRNATarget
CT835717.1	ncRNA:21   CACGGUGUUGACGUUUGACGU   1   *||*|||||=||||||||||| targets:83   UUGGCACAAUUGCAAACUGCA   103 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA044M18, full insert sequence	NA	coding protein	psRNATarget
XM_015758523.1	ncRNA:21   CACGGUGUUGACGUUUGACGU   1   *||*|||||=||||||||||| targets:1694   UUGGCACAAUUGCAAACUGCA   1714 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ent-cassadiene C2-hydroxylase-like (LOC4348720), mRNA	ent-cassadiene C2-hydroxylase-like(LOC4348720)	coding protein	psRNATarget

Reference

1	PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"; Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C; Genome Res. 18:1456-1465(2008).