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BaseInfo

ncRNA ID	osa-miR1436
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:20316586-20316746 [-]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	21 - ACAUUAUGGGACGGAGGGAGU - 41
Stem-loop(if miRNA)	--------                      A                                          U AGUUUAUGU        GCUACUCCCUCCGUCCCAUAAU UUAAAACCUAGGACUGGAUAGGACGUUUCAUAGUACAAUGAC C |||||||||        |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| A UCAAAUAUA        UGAUGAGGGAGGCAGGGUAUUA AAUUUUGGAUCCUGACCUAUCCUGCAAAGUAUCAUGUUACUG G          UCCAACUC                      C                                          A
Stem-loop sequence	AGUUUAUGUGCUACUCCCUCCGUCCCAUAAUAUUAAAACCUAGGACUGGAUAGGACGUUUCAUAGUACAAUGACUCAGAGUCAUUGUACUAUGAAACGUCCUAUCCAGUCCUAGGUUUUAACAUUAUGGGACGGAGGGAGUAGUCUCAACCUAUAUAAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015763160.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   |||=|||||||=||||||||| targets:1081   ACUUCCUCCGUUCCAUAAUGU   1101 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group acidic endochitinase (LOC4325066), mRNA	acidic endochitinase(LOC4325066)	coding protein	psRNATarget
AK111415.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   |||=|||||||=||||||||| targets:1076   ACUUCCUCCGUUCCAUAAUGU   1096 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-182-G02, full insert sequence	NA	coding protein	psRNATarget
AK242470.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   |||||=|||||=||||||||| targets:856   ACUCCUUCCGUUCCAUAAUGU   876 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J080302H11, full insert sequence	NA	coding protein	psRNATarget
XM_015770193.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   |||||||||||||||||||*| targets:2854   ACUCCCUCCGUCCCAUAAUAU   2874 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329136 (LOC4329136), transcript variant X1, mRNA	uncharacterized LOC4329136(LOC4329136)	coding protein	psRNATarget
AK120143.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   |||||||||||||||||||*| targets:2927   ACUCCCUCCGUCCCAUAAUAU   2947 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013028F03, full insert sequence	NA	coding protein	psRNATarget
AK288920.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   |||||||||||||||||||*| targets:3874   ACUCCCUCCGUCCCAUAAUAU   3894 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090081L22, full insert sequence	NA	coding protein	psRNATarget
AK064773.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   |||||||||||||||||||*| targets:2877   ACUCCCUCCGUCCCAUAAUAU   2897 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013000A22, full insert sequence	NA	coding protein	psRNATarget
XM_015772460.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   |||||||||||||||||||*| targets:3045   ACUCCCUCCGUCCCAUAAUAU   3065 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g23020 (LOC4331715), transcript variant X3, mRNA	pentatricopeptide repeat-containing protein At3g23020(LOC4331715)	coding protein	psRNATarget
XM_015784849.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   |||||||||||||||||||*| targets:2571   ACUCCCUCCGUCCCAUAAUAU   2591 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group serine/threonine-protein kinase tricorner (LOC4339288), transcript variant X2, mRNA	serine/threonine-protein kinase tricorner(LOC4339288)	coding protein	psRNATarget
XM_015784846.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   |||||||||||||||||||*| targets:2515   ACUCCCUCCGUCCCAUAAUAU   2535 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group serine/threonine-protein kinase tricorner (LOC4339288), transcript variant X1, mRNA	serine/threonine-protein kinase tricorner(LOC4339288)	coding protein	psRNATarget
XM_015788213.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   |||||||||||||||||||*| targets:2480   ACUCCCUCCGUCCCAUAAUAU   2500 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable DNA helicase MCM9 (LOC4340503), transcript variant X1, mRNA	probable DNA helicase MCM9(LOC4340503)	coding protein	psRNATarget
AK100667.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   |||||||||||||||||||*| targets:2479   ACUCCCUCCGUCCCAUAAUAU   2499 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023112H01, full insert sequence	NA	coding protein	psRNATarget
AK063394.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   |||||||||||||||||||*| targets:2441   ACUCCCUCCGUCCCAUAAUAU   2461 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-114-H06, full insert sequence	NA	coding protein	psRNATarget
XM_015788216.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   |||||||||||||||||||*| targets:2338   ACUCCCUCCGUCCCAUAAUAU   2358 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable DNA helicase MCM9 (LOC4340503), transcript variant X4, mRNA	probable DNA helicase MCM9(LOC4340503)	coding protein	psRNATarget
XM_015789462.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   |||||||||||||||||||*| targets:546   ACUCCCUCCGUCCCAUAAUAU   566 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group proline-, glutamic acid- and leucine-rich protein 1 (LOC4343789), mRNA	proline-, glutamic acid- and leucine-rich protein 1(LOC4343789)	coding protein	psRNATarget
XM_015774394.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   |||||||||||||||||||*| targets:1892   ACUCCCUCCGUCCCAUAAUAU   1912 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group U-box domain-containing protein 4-like (LOC107278225), mRNA	U-box domain-containing protein 4-like(LOC107278225)	coding protein	psRNATarget
XM_015767968.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   |||||||||||||||||||*| targets:1403   ACUCCCUCCGUCCCAUAAUAU   1423 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group altered inheritance rate of mitochondria protein 25 (LOC4328840), mRNA	altered inheritance rate of mitochondria protein 25(LOC4328840)	coding protein	psRNATarget
XM_015793226.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   |||||||||||||||||||*| targets:1743   ACUCCCUCCGUCCCAUAAUAU   1763 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative lysine-specific demethylase JMJD5 (LOC9269734), transcript variant X3, mRNA	putative lysine-specific demethylase JMJD5(LOC9269734)	coding protein	psRNATarget
XM_015793224.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   |||||||||||||||||||*| targets:1729   ACUCCCUCCGUCCCAUAAUAU   1749 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative lysine-specific demethylase JMJD5 (LOC9269734), transcript variant X1, mRNA	putative lysine-specific demethylase JMJD5(LOC9269734)	coding protein	psRNATarget
XM_015793712.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   |||||||||||||||||||*| targets:1207   ACUCCCUCCGUCCCAUAAUAU   1227 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group polyubiquitin-D (LOC4344831), mRNA	polyubiquitin-D(LOC4344831)	coding protein	psRNATarget
AK100009.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   |||||||||||||||||||*| targets:857   ACUCCCUCCGUCCCAUAAUAU   877 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013138B09, full insert sequence	NA	coding protein	psRNATarget
XM_015793225.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   |||||||||||||||||||*| targets:1656   ACUCCCUCCGUCCCAUAAUAU   1676 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative lysine-specific demethylase JMJD5 (LOC9269734), transcript variant X2, mRNA	putative lysine-specific demethylase JMJD5(LOC9269734)	coding protein	psRNATarget
XM_015756113.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   |||||||||||||||||||*| targets:1620   ACUCCCUCCGUCCCAUAAUAU   1640 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable receptor-like protein kinase At5g47070 (LOC4347684), mRNA	probable receptor-like protein kinase At5g47070(LOC4347684)	coding protein	psRNATarget
AK106768.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   |||||||||||||||||||*| targets:117   ACUCCCUCCGUCCCAUAAUAU   137 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-115-F05, full insert sequence	NA	coding protein	psRNATarget
AK067370.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   |||||||||||||||||||*| targets:920   ACUCCCUCCGUCCCAUAAUAU   940 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013105M23, full insert sequence	NA	coding protein	psRNATarget
AK108488.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   |||||||||||||||||||*| targets:84   ACUCCCUCCGUCCCAUAAUAU   104 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-143-F11, full insert sequence	NA	coding protein	psRNATarget
LQ236665.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   |||||||||||||||||||*| targets:2   ACUCCCUCCGUCCCAUAAUAU   22 Target Full Sequence	1.5	Sequence 2660 from Patent EP2985353	NA	coding protein	psRNATarget
JB164996.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   |||||||||||||||||||*| targets:2   ACUCCCUCCGUCCCAUAAUAU   22 Target Full Sequence	1.5	Sequence 2660 from Patent EP2559767	NA	coding protein	psRNATarget
HI404535.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   |||||||||||||||||||*| targets:2   ACUCCCUCCGUCCCAUAAUAU   22 Target Full Sequence	1.5	Sequence 2660 from Patent EP2074227	NA	coding protein	psRNATarget
AK241651.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   |||||||||||||||||||** targets:938   ACUCCCUCCGUCCCAUAAUAA   958 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065191A02, full insert sequence	NA	coding protein	psRNATarget
CT829461.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   |||||||||||||||||||** targets:1666   ACUCCCUCCGUCCCAUAAUAC   1686 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA122N08, full insert sequence	NA	coding protein	psRNATarget
AK288243.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   ||||=||||||||||*||||| targets:2205   ACUCUCUCCGUCCCAGAAUGU   2225 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090014A15, full insert sequence	NA	coding protein	psRNATarget
AK242713.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   |||=|||||||||||||||*| targets:1456   ACUUCCUCCGUCCCAUAAUAU   1476 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090041O10, full insert sequence	NA	coding protein	psRNATarget
XM_015795728.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   ||||=||||||||||||||*| targets:1086   ACUCUCUCCGUCCCAUAAUAU   1106 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4347738 (LOC4347738), transcript variant X1, mRNA	uncharacterized LOC4347738(LOC4347738)	coding protein	psRNATarget
AK072137.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   *|||=||||||||||||||*| targets:3018   UCUCUCUCCGUCCCAUAAUAU   3038 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013128O11, full insert sequence	NA	coding protein	psRNATarget
XM_015795569.1	ncRNA:21   UGAGGGAGGCAGGGUAUUACA   1   *|||=||||||||||||||*| targets:989   UCUCUCUCCGUCCCAUAAUAU   1009 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4345862 (LOC4345862), mRNA	uncharacterized LOC4345862(LOC4345862)	coding protein	psRNATarget

Reference

1	PMID:18312648 "Identification of novel and candidate miRNAs in rice by high throughput sequencing"; Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK; BMC Plant Biol. 8:25(2008).