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BaseInfo

ncRNA ID	osa-miR159a.1
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:17681923-17682194 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	242 - UUUGGAUUGAAGGGAGCUCUG - 262
Stem-loop(if miRNA)	GUUGU   C  U                  AA     U   GC   -    C   UG    G     U    G UC    U      CU   UG  CAUCAUUCAGCUCGAGAUCUGAAAGAAACUACUCCAAUUUAU      GGA GU GAGCUCCUUUCGGUCCAA  AGGGG GUU  UGU GGGU GAU  AGCU CUGGG CAUG A  CCGU AGCCUA  CCA  UU                                          A      ||| || ||||||||||||||||||  ||||| |||  ||| |||| |||  |||| ||||| |||| |  |||| ||||||  |||  ||      UCU CG CUCGAGGGAAGUUAGGUU  UCUCC CAG  ACA CCCA CUA  UCGA GACCC GUAC U  GGUA UCGGAU  GGU  UG                                          C UGUUU   A  U                  --     -   GU   U    A   CG    G     C    G UC    U      AG   --  UUGCUCAUGAGGUAGUAAAAGGAUAGAUGUGUGUAUGAUAAU
Stem-loop sequence	GUUGUGGACGUUGAGCUCCUUUCGGUCCAAAAAGGGGUGUUGCUGUGGGUCGAUUGAGCUGCUGGGUCAUGGAUCCCGUUAGCCUACUCCAUGUUCAUCAUUCAGCUCGAGAUCUGAAAGAAACUACUCCAAUUUAUACUAAUAGUAUGUGUGUAGAUAGGAAAAUGAUGGAGUACUCGUUGUUGGGAUAGGCUUAUGGCUUGCAUGCCCCAGGAGCUGCAUCAACCCUACAUGGACCCUCUUUGGAUUGAAGGGAGCUCUGCAUCUUUUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015783617.1	ncRNA:21   GUCUCGAGGGAAGUUAGGUUU   1   ==||||||||||=|||||||* targets:1068   UGGAGCUCCCUUUAAUCCAAU   1088 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transcription factor GAMYB (LOC4339167), mRNA	transcription factor GAMYB(LOC4339167)	coding protein	psRNATarget
D88621.1	ncRNA:21   GUCUCGAGGGAAGUUAGGUUU   1   ==||||||||||=|||||||* targets:1071   UGGAGCUCCCUUUAAUCCAAU   1091 Target Full Sequence	2.5	Oryza sativa mRNA for OSMYB5, complete cds	NA	coding protein	psRNATarget
AK106613.1	ncRNA:21   GUCUCGAGGGAAGUUAGGUUU   1   =|||||||||||||*|||||* targets:403   UAGAGCUCCCUUCACUCCAAU   423 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-112-G09, full insert sequence	NA	coding protein	psRNATarget
XM_015785637.1	ncRNA:21   GUCUCGAGGGAAGUUAGGUUU   1   =|||||||||||||*|||||* targets:1063   UAGAGCUCCCUUCACUCCAAU   1083 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transcription factor GAMYB (LOC4341475), mRNA	transcription factor GAMYB(LOC4341475)	coding protein	psRNATarget
AB212075.1	ncRNA:21   GUCUCGAGGGAAGUUAGGUUU   1   =|||||||||||||*|||||* targets:1418   UAGAGCUCCCUUCACUCCAAU   1438 Target Full Sequence	2.5	Oryza sativa Japonica Group mRNA for GAMYB-like1, complete cds	NA	coding protein	psRNATarget
XM_015783619.1	ncRNA:21   GUCUCGAGGGAAGUUAGGUUU   1   ||||||*||||||||*||||| targets:67   CAGAGCACCCUUCAAGCCAAA   87 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278385 (LOC107278385), mRNA	uncharacterized LOC107278385(LOC107278385)	coding protein	psRNATarget
XM_015755754.1	ncRNA:21   GUCUCGAGGGAAGUUAGGUUU   1   |=|||||||*||||||||||* targets:1485   CGGAGCUCCAUUCAAUCCAAC   1505 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein transport protein sec31 (LOC9268165), mRNA	protein transport protein sec31(LOC9268165)	coding protein	psRNATarget
AK119607.1	ncRNA:21   GUCUCGAGGGAAGUUAGGUUU   1   ==||||||||||||*|||||= targets:1260   UGGAGCUCCCUUCACUCCAAG   1280 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-117-F06, full insert sequence	NA	coding protein	psRNATarget
CT830881.1	ncRNA:21   GUCUCGAGGGAAGUUAGGUUU   1   ==||||||||||||*|||||= targets:1182   UGGAGCUCCCUUCACUCCAAG   1202 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA206M18, full insert sequence	NA	coding protein	psRNATarget
CT830884.1	ncRNA:21   GUCUCGAGGGAAGUUAGGUUU   1   ==||||||||||||*|||||= targets:1258   UGGAGCUCCCUUCACUCCAAG   1278 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA248K02, full insert sequence	NA	coding protein	psRNATarget
XM_015766850.1	ncRNA:21   GUCUCGAGGGAAGUUAGGUUU   1   ==||||||||||||*|||||= targets:1279   UGGAGCUCCCUUCACUCCAAG   1299 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transcription factor GAMYB (LOC4327362), transcript variant X2, mRNA	transcription factor GAMYB(LOC4327362)	coding protein	psRNATarget
CT830883.1	ncRNA:21   GUCUCGAGGGAAGUUAGGUUU   1   ==||||||||||||*|||||= targets:1258   UGGAGCUCCCUUCACUCCAAG   1278 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA248F23, full insert sequence	NA	coding protein	psRNATarget
AK102841.1	ncRNA:21   GUCUCGAGGGAAGUUAGGUUU   1   ==||||||||||||*|||||= targets:1259   UGGAGCUCCCUUCACUCCAAG   1279 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033109N02, full insert sequence	NA	coding protein	psRNATarget
CT830882.1	ncRNA:21   GUCUCGAGGGAAGUUAGGUUU   1   ==||||||||||||*|||||= targets:1260   UGGAGCUCCCUUCACUCCAAG   1280 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA246D08, full insert sequence	NA	coding protein	psRNATarget
X98355.1	ncRNA:21   GUCUCGAGGGAAGUUAGGUUU   1   ==||||||||||||*|||||= targets:1351   UGGAGCUCCCUUCACUCCAAG   1371 Target Full Sequence	2.5	O.sativa mRNA for transcription activator, GAMyb	NA	coding protein	psRNATarget
AK063951.1	ncRNA:21   GUCUCGAGGGAAGUUAGGUUU   1   ==||||||||||||*|||||= targets:1257   UGGAGCUCCCUUCACUCCAAG   1277 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-123-F05, full insert sequence	NA	coding protein	psRNATarget
XM_015766849.1	ncRNA:21   GUCUCGAGGGAAGUUAGGUUU   1   ==||||||||||||*|||||= targets:1348   UGGAGCUCCCUUCACUCCAAG   1368 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transcription factor GAMYB (LOC4327362), transcript variant X1, mRNA	transcription factor GAMYB(LOC4327362)	coding protein	psRNATarget
AK120776.1	ncRNA:21   GUCUCGAGGGAAGUUAGGUUU   1   |=||||*||||||||*||||| targets:630   CGGAGCCCCCUUCAAACCAAA   650 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023009G15, full insert sequence	NA	coding protein	psRNATarget
XM_015766399.1	ncRNA:21   GUCUCGAGGGAAGUUAGGUUU   1   |=||||*||||||||*||||| targets:849   CGGAGCCCCCUUCAAACCAAA   869 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9271635 (LOC9271635), transcript variant X2, mRNA	uncharacterized LOC9271635(LOC9271635)	coding protein	psRNATarget
XM_015766398.1	ncRNA:21   GUCUCGAGGGAAGUUAGGUUU   1   |=||||*||||||||*||||| targets:849   CGGAGCCCCCUUCAAACCAAA   869 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9271635 (LOC9271635), transcript variant X1, mRNA	uncharacterized LOC9271635(LOC9271635)	coding protein	psRNATarget
AK109470.1	ncRNA:21   GUCUCGAGGGAAGUUAGGUUU   1   =*|||=||||||||*|||||| targets:1512   UUGAGUUCCCUUCAUUCCAAA   1532 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-128-E03, full insert sequence	NA	coding protein	psRNATarget
XM_015757264.1	ncRNA:21   GUCUCGAGGGAAGUUAGGUUU   1   =***||||||||||||||||= targets:339   UUUUGCUCCCUUCAAUCCAAG   359 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group E3 ubiquitin-protein ligase At3g02290 (LOC4348088), transcript variant X3, mRNA	E3 ubiquitin-protein ligase At3g02290(LOC4348088)	coding protein	psRNATarget
XM_015773879.1	ncRNA:21   GUCUCGAGGGAAGUUAGGUUU   1   |*|||||||||||||*||||* targets:1013   CCGAGCUCCCUUCAAGCCAAU   1033 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group myb-related protein P (LOC4333315), mRNA	myb-related protein P(LOC4333315)	coding protein	psRNATarget
XM_015777996.1	ncRNA:21   GUCUCGAGGGAAGUUAGGUUU   1   ==||*|||||||||*|||||| targets:1703   UGGAACUCCCUUCACUCCAAA   1723 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group UTP--glucose-1-phosphate uridylyltransferase (LOC4326201), mRNA	UTP--glucose-1-phosphate uridylyltransferase(LOC4326201)	coding protein	psRNATarget

Reference

1	PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004).
2	PMID:19055717 "Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice"; Lacombe S, Nagasaki H, Santi C, Duval D, Piegu B, Bangratz M, Breitler JC, Guiderdoni E, Brugidou C, Hirsch J, Cao X, Brice C, Panaud O, Karlowski WM, Sato Y, Echeverria M; BMC Plant Biol. 8:123(2008).