| ncRNA ID | osa-miR159a.2 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr1:17681923-17682194 [+] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 201 - UUGCAUGCCCCAGGAGCUGCA - 221 |
| Stem-loop(if miRNA) |
GUUGU C U AA U GC - C UG G U G UC U CU UG CAUCAUUCAGCUCGAGAUCUGAAAGAAACUACUCCAAUUUAU GGA GU GAGCUCCUUUCGGUCCAA AGGGG GUU UGU GGGU GAU AGCU CUGGG CAUG A CCGU AGCCUA CCA UU A ||| || |||||||||||||||||| ||||| ||| ||| |||| ||| |||| ||||| |||| | |||| |||||| ||| || UCU CG CUCGAGGGAAGUUAGGUU UCUCC CAG ACA CCCA CUA UCGA GACCC GUAC U GGUA UCGGAU GGU UG C UGUUU A U -- - GU U A CG G C G UC U AG -- UUGCUCAUGAGGUAGUAAAAGGAUAGAUGUGUGUAUGAUAAU |
| Stem-loop sequence | GUUGUGGACGUUGAGCUCCUUUCGGUCCAAAAAGGGGUGUUGCUGUGGGUCGAUUGAGCUGCUGGGUCAUGGAUCCCGUUAGCCUACUCCAUGUUCAUCAUUCAGCUCGAGAUCUGAAAGAAACUACUCCAAUUUAUACUAAUAGUAUGUGUGUAGAUAGGAAAAUGAUGGAGUACUCGUUGUUGGGAUAGGCUUAUGGCUUGCAUGCCCCAGGAGCUGCAUCAACCCUACAUGGACCCUCUUUGGAUUGAAGGGAGCUCUGCAUCUUUUGU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AK241800.1 |
|
1.5 | Oryza sativa Japonica Group cDNA, clone: J065208I24, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| XM_015772592.1 |
|
1.5 | PREDICTED: Oryza sativa Japonica Group trihelix transcription factor GTL1 (LOC4331378), mRNA | trihelix transcription factor GTL1(LOC4331378) | coding protein | psRNATarget | |||||||||
| AK059055.1 |
|
2.5 | Oryza sativa Japonica Group cDNA clone:001-021-F02, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| CT830545.1 |
|
2.5 | Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA218F06, full insert sequence | NA | coding protein | psRNATarget |
| 1 | PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004). |
| 2 | PMID:19055717
"Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice"; Lacombe S, Nagasaki H, Santi C, Duval D, Piegu B, Bangratz M, Breitler JC, Guiderdoni E, Brugidou C, Hirsch J, Cao X, Brice C, Panaud O, Karlowski WM, Sato Y, Echeverria M; BMC Plant Biol. 8:123(2008). |