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BaseInfo

ncRNA ID	osa-miR2121a
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:16373428-16373547 [+]
Reference genome	MSU7
Source	miRBase
Length	24
Mature sequence(if miRNA)	96 - AAAACGGAGCGGUCCAUUAGCGCG - 119
Stem-loop(if miRNA)	--        CU                     ------AAC      GCGGCCUUAGGCUGU   GUGCUAAU  AUCGCUCCGUUUUCCGUGCGG         ACAGCC               G   ||||||||  |||||||||||||||||||||         ||||||   CGCGAUUA  UGGCGAGGCAAAAGGCACGUC         CAAGGG               U UG        CC                     CCCUUUACU      UAGACCAUCUACCCU
Stem-loop sequence	GUGCUAAUCUAUCGCUCCGUUUUCCGUGCGGAACACAGCCGCGGCCUUAGGCUGUGUUCCCAUCUACCAGAUGGGAACUCAUUUCCCCUGCACGGAAAACGGAGCGGUCCAUUAGCGCGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288770.1	ncRNA:24   GCGCGAUUACCUGGCGAGGCAAAA   1   |||||||||||||||||||||||| targets:2162   CGCGCUAAUGGACCGCUCCGUUUU   2185 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090067O18, full insert sequence	NA	coding protein	psRNATarget
AK102282.1	ncRNA:24   GCGCGAUUACCUGGCGAGGCAAAA   1   |||||||||||||=|||||||||| targets:780   CGCGCUAAUGGACUGCUCCGUUUU   803 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033089G06, full insert sequence	NA	coding protein	psRNATarget
CT836255.1	ncRNA:24   GCGCGAUUACCUGGCGAGGCAAAA   1   |||||||||||||=|||||||||| targets:642   CGCGCUAAUGGACUGCUCCGUUUU   665 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109M12, full insert sequence	NA	coding protein	psRNATarget
AK289139.1	ncRNA:24   GCGCGAUUACCUGGCGAGGCAAAA   1   ||=|||||||||||||||=||||| targets:710   CGUGCUAAUGGACCGCUCUGUUUU   733 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090099E06, full insert sequence	NA	coding protein	psRNATarget
XM_015772458.1	ncRNA:24   GCGCGAUUACCUGGCGAGGCAAAA   1   =|=|||||||||=||||||||||| targets:3236   UGUGCUAAUGGAUCGCUCCGUUUU   3259 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g23020 (LOC4331715), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At3g23020(LOC4331715)	coding protein	psRNATarget
XM_015772459.1	ncRNA:24   GCGCGAUUACCUGGCGAGGCAAAA   1   =|=|||||||||=||||||||||| targets:3231   UGUGCUAAUGGAUCGCUCCGUUUU   3254 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g23020 (LOC4331715), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At3g23020(LOC4331715)	coding protein	psRNATarget
AK288759.1	ncRNA:24   GCGCGAUUACCUGGCGAGGCAAAA   1   ||||||||||*||||||||||||| targets:1045   CGCGCUAAUGAACCGCUCCGUUUU   1068 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090066M14, full insert sequence	NA	coding protein	psRNATarget
XM_015786303.1	ncRNA:24   GCGCGAUUACCUGGCGAGGCAAAA   1   |*|||||||||||||||||||||| targets:1830   CACGCUAAUGGACCGCUCCGUUUU   1853 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group 3-ketoacyl-CoA synthase 5 (LOC4340694), mRNA	3-ketoacyl-CoA synthase 5(LOC4340694)	coding protein	psRNATarget
AK069210.1	ncRNA:24   GCGCGAUUACCUGGCGAGGCAAAA   1   ||=|=||||||||=|||||||||| targets:888   CGUGUUAAUGGACUGCUCCGUUUU   911 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023012M02, full insert sequence	NA	coding protein	psRNATarget
AK100742.1	ncRNA:24   GCGCGAUUACCUGGCGAGGCAAAA   1   =|||||||||*||||||||||||| targets:2592   UGCGCUAAUGAACCGCUCCGUUUU   2615 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023118E24, full insert sequence	NA	coding protein	psRNATarget
XM_015791314.1	ncRNA:24   GCGCGAUUACCUGGCGAGGCAAAA   1   ||||=||||*|||||||||||||| targets:2356   CGCGUUAAUAGACCGCUCCGUUUU   2379 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4343872 (LOC4343872), transcript variant X7, mRNA	uncharacterized LOC4343872(LOC4343872)	coding protein	psRNATarget
AK066608.1	ncRNA:24   GCGCGAUUACCUGGCGAGGCAAAA   1   =|||||||||*||||||||||||| targets:2590   UGCGCUAAUGAACCGCUCCGUUUU   2613 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013074L04, full insert sequence	NA	coding protein	psRNATarget
AK067307.1	ncRNA:24   GCGCGAUUACCUGGCGAGGCAAAA   1   =|||||||||*||||||||||||| targets:1888   UGCGCUAAUGAACCGCUCCGUUUU   1911 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013104A16, full insert sequence	NA	coding protein	psRNATarget
AK105573.1	ncRNA:24   GCGCGAUUACCUGGCGAGGCAAAA   1   =||*||||||||=||||||||||| targets:414   UGCACUAAUGGAUCGCUCCGUUUU   437 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-128-D04, full insert sequence	NA	coding protein	psRNATarget
AK067102.1	ncRNA:24   GCGCGAUUACCUGGCGAGGCAAAA   1   ||=|=||||*|||||||||||||| targets:954   CGUGUUAAUAGACCGCUCCGUUUU   977 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013095D16, full insert sequence	NA	coding protein	psRNATarget
AK103705.1	ncRNA:24   GCGCGAUUACCUGGCGAGGCAAAA   1   |*||||||||||||*||||||||| targets:2992   CACGCUAAUGGACCACUCCGUUUU   3015 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033136N14, full insert sequence	NA	coding protein	psRNATarget
AK241447.1	ncRNA:24   GCGCGAUUACCUGGCGAGGCAAAA   1   =|=|*|||||||||||||=||||| targets:484   UGUGAUAAUGGACCGCUCUGUUUU   507 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065163F05, full insert sequence	NA	coding protein	psRNATarget
AK289056.1	ncRNA:24   GCGCGAUUACCUGGCGAGGCAAAA   1   |*|*|||||||||||||||||||| targets:212   CACACUAAUGGACCGCUCCGUUUU   235 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090093D17, full insert sequence	NA	coding protein	psRNATarget
LQ236619.1	ncRNA:24   GCGCGAUUACCUGGCGAGGCAAAA   1   |||*||||||||||*||||||||| targets:184   CGCACUAAUGGACCACUCCGUUUU   207 Target Full Sequence	1.5	Sequence 2614 from Patent EP2985353	NA	coding protein	psRNATarget
JB164950.1	ncRNA:24   GCGCGAUUACCUGGCGAGGCAAAA   1   |||*||||||||||*||||||||| targets:184   CGCACUAAUGGACCACUCCGUUUU   207 Target Full Sequence	1.5	Sequence 2614 from Patent EP2559767	NA	coding protein	psRNATarget
HI404489.1	ncRNA:24   GCGCGAUUACCUGGCGAGGCAAAA   1   |||*||||||||||*||||||||| targets:184   CGCACUAAUGGACCACUCCGUUUU   207 Target Full Sequence	1.5	Sequence 2614 from Patent EP2074227	NA	coding protein	psRNATarget
AK106772.1	ncRNA:24   GCGCGAUUACCUGGCGAGGCAAAA   1   =||*||||||*|=||||||||||| targets:1787   UGCUCUAAUGAAUCGCUCCGUUUU   1810 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-115-G01, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:19081140 "Heavy metal-regulated new microRNAs from rice"; Huang SQ, Peng J, Qiu CX, Yang ZM; J Inorg Biochem. 103:282-287(2009).