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BaseInfo

ncRNA ID osa-miR820a
Species Oryza sativa
Class miRNA
Genome position Chr1:14130479-14130669 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 5 - UCGGCCUCGUGGAUGGACCAG - 25
Stem-loop(if miRNA) U C    G    G          A     -  A  A           U    U   A     AU            CG     A  GU      A
 G GUCG CCUC UGGAUGGACC GGAGC UC AC UUCCUUAAGGU GUUC UUC AACCC  ACAAGGUUCCAC  CCUGC UU  UCCAAG G
 | |||| |||| |||||||||| ||||| || || ||||||||||| |||| ||| |||||  ||||||||||||  ||||| ||  |||||| U
 C CAGC GGAG ACCUGCCUGG CCUCG AG UG AAGGAAUUCCG CAAG AAG UUGGG  UGUUCCAAGGUG  GGAUG AA  AGGUUC G
A U    A    G          A     U  C  -           U    C   G     AU            AA     A  GU      U
Stem-loop sequence UGCGUCGGCCUCGUGGAUGGACCAGGAGCUCAACAUUCCUUAAGGUUGUUCUUUCAAACCCAUACAAGGUUCCACCGCCUGCAUUGUUCCAAGAGUGUCUUGGAUGAAAGUAGGAAGUGGAACCUUGUUAGGGUUGGAACGAACUGCCUUAAGGAAGUCGAUGCUCCAGGUCCGUCCAGGAGGACGACUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015782959.1
ncRNA:21   GACCAGGUAGGUGCUCCGGCU   1
  **|||=|||||||||||||*|
targets:1051   GCGGUUCAUCCACGAGGCCAA   1071

2.5 PREDICTED: Oryza sativa Japonica Group L-ascorbate oxidase homolog (LOC4339141), transcript variant X1, mRNA L-ascorbate oxidase homolog(LOC4339141) coding protein psRNATarget
XM_015782960.1
ncRNA:21   GACCAGGUAGGUGCUCCGGCU   1
  **|||=|||||||||||||*|
targets:1051   GCGGUUCAUCCACGAGGCCAA   1071

2.5 PREDICTED: Oryza sativa Japonica Group L-ascorbate oxidase homolog (LOC4339141), transcript variant X2, mRNA L-ascorbate oxidase homolog(LOC4339141) coding protein psRNATarget
XM_015782961.1
ncRNA:21   GACCAGGUAGGUGCUCCGGCU   1
  **|||=|||||||||||||*|
targets:1051   GCGGUUCAUCCACGAGGCCAA   1071

2.5 PREDICTED: Oryza sativa Japonica Group L-ascorbate oxidase homolog (LOC4339141), transcript variant X3, mRNA L-ascorbate oxidase homolog(LOC4339141) coding protein psRNATarget
AK105493.1
ncRNA:21   GACCAGGUAGGUGCUCCGGCU   1
  **|||*|=|||||||||||||
targets:226   GCGGUACGUCCACGAGGCCGA   246

2.0 Oryza sativa Japonica Group cDNA clone:001-127-C03, full insert sequence NA coding protein psRNATarget
XM_015766171.1
ncRNA:21   GACCAGGUAGGUGCUCCGGCU   1
  **|||*|=|||||||||||||
targets:231   GCGGUACGUCCACGAGGCCGA   251

2.0 PREDICTED: Oryza sativa Japonica Group NAC domain-containing protein 2 (LOC4325516), mRNA NAC domain-containing protein 2(LOC4325516) coding protein psRNATarget
JN185443.1
ncRNA:21   GACCAGGUAGGUGCUCCGGCU   1
  **|||*|=|||||||||||||
targets:120   GCGGUACGUCCACGAGGCCGA   140

2.0 Oryza sativa Japonica Group NAC transcription factor 14 (NAC14) mRNA, complete cds NA coding protein psRNATarget
XM_015785281.1
ncRNA:21   GACCAGGUAGGUGCUCCGGCU   1
  ***|||||*||||||||||||
targets:428   GAAGUCCAACCACGAGGCCGA   448

2.5 PREDICTED: Oryza sativa Japonica Group M protein, serotype 5 (LOC4339509), mRNA M protein, serotype 5(LOC4339509) coding protein psRNATarget
AK060333.1
ncRNA:21   GACCAGGUAGGUGCUCCGGCU   1
  ***|||||*||||||||||||
targets:419   GAAGUCCAACCACGAGGCCGA   439

2.5 Oryza sativa Japonica Group cDNA clone:001-008-B08, full insert sequence NA coding protein psRNATarget
AK100682.1
ncRNA:21   GACCAGGUAGGUGCUCCGGCU   1
  ***|||||*||||||||||||
targets:420   GAAGUCCAACCACGAGGCCGA   440

2.5 Oryza sativa Japonica Group cDNA clone:J023113L22, full insert sequence NA coding protein psRNATarget

Reference

1 PMID:16959252
"Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development";
Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH;
FEBS Lett. 580:5111-5116(2006).
2 PMID:18353984
"Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)";
Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ;
Proc Natl Acad Sci U S A. 105:4951-4956(2008).
3 PMID:19903869
"Rice MicroRNA effector complexes and targets";
Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y;
Plant Cell. 21:3421-3435(2009).