| ncRNA ID | osa-miR5802 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr1:13088727-13088790 [+] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 24 |
| Mature sequence(if miRNA) | 7 - AUGGACUGUACUUUGUAAAGCGGA - 30 |
| Stem-loop(if miRNA) |
G G A A C C AGG AUAUGGACU U CUUUGUA AG GGA U ||| ||||||||| | ||||||| || ||| C UCC UGUGCUUGG A GGAAUAU UC CCU U G G - A C U |
| Stem-loop sequence | AGGGAUAUGGACUGUACUUUGUAAAGCGGACUCUUUCCCCUAUAUAAGGAGGGUUCGUGUGCCU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AK066571.1 |
|
1.5 | Oryza sativa Japonica Group cDNA clone:J013068K23, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| XM_015765344.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107279812 (LOC107279812), transcript variant X2, mRNA | uncharacterized LOC107279812(LOC107279812) | coding protein | psRNATarget | |||||||||
| XM_015765343.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107279812 (LOC107279812), transcript variant X1, mRNA | uncharacterized LOC107279812(LOC107279812) | coding protein | psRNATarget | |||||||||
| XM_015795853.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107282086 (LOC107282086), transcript variant X3, mRNA | uncharacterized LOC107282086(LOC107282086) | coding protein | psRNATarget |
| 1 | PMID:22158467
"Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011). |