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BaseInfo

ncRNA ID	osa-miR408-5p
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:12301661-12301873 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	31 - CAGGGAUGAGGCAGAGCAUGG - 51
Stem-loop(if miRNA)	-----     UUCU U  UU      -      AGA  GGGAUGAGGCAGAGCAUGGGAUGGGGCUAUCAACAGAUGUAGAUUAUUCCUUGCACAAGAGAUGAUGAUGAG      GGGAG    G GA  GGAGAG GAGAGG   CA                                                                        C      |||||    | ||  |||||| ||||||   ||                                                                        U      CUCUC    C CU  UCUCUC CUCUCC   CG                                                                        G UGUGU     ---U U  -C      U      ACA  UCCCCUCGGUCCCUUCUCCGUCACGUCCCCUCCCUCGUUGUUGUUGUGGUCGGUAGAGAGUCUUGAGUAAGU
Stem-loop sequence	GGGAGUUCUGUGAUUGGAGAGGAGAGGAGACAGGGAUGAGGCAGAGCAUGGGAUGGGGCUAUCAACAGAUGUAGAUUAUUCCUUGCACAAGAGAUGAUGAUGAGCUGUGAAUGAGUUCUGAGAGAUGGCUGGUGUUGUUGUUGCUCCCUCCCCUGCACUGCCUCUUCCCUGGCUCCCCUGCACACCUCUCUCUCUCUCUCUCUCUCUCUGUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK067957.1	ncRNA:21   GGUACGAGACGGAGUAGGGAC   1   =*||||||||||||||||=|* targets:2433   UGAUGCUCUGCCUCAUCCUUA   2453 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013128M05, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:15258262 "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis"; Sunkar R, Zhu JK; Plant Cell. 16:2001-2019(2004).
2	PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors"; Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y; PLoS Pathog. 7:e1002176(2011).