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BaseInfo

ncRNA ID	osa-miR408-3p
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:12301661-12301873 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	153 - CUGCACUGCCUCUUCCCUGGC - 173
Stem-loop(if miRNA)	-----     UUCU U  UU      -      AGA  GGGAUGAGGCAGAGCAUGGGAUGGGGCUAUCAACAGAUGUAGAUUAUUCCUUGCACAAGAGAUGAUGAUGAG      GGGAG    G GA  GGAGAG GAGAGG   CA                                                                        C      |||||    | ||  |||||| ||||||   ||                                                                        U      CUCUC    C CU  UCUCUC CUCUCC   CG                                                                        G UGUGU     ---U U  -C      U      ACA  UCCCCUCGGUCCCUUCUCCGUCACGUCCCCUCCCUCGUUGUUGUUGUGGUCGGUAGAGAGUCUUGAGUAAGU
Stem-loop sequence	GGGAGUUCUGUGAUUGGAGAGGAGAGGAGACAGGGAUGAGGCAGAGCAUGGGAUGGGGCUAUCAACAGAUGUAGAUUAUUCCUUGCACAAGAGAUGAUGAUGAGCUGUGAAUGAGUUCUGAGAGAUGGCUGGUGUUGUUGUUGCUCCCUCCCCUGCACUGCCUCUUCCCUGGCUCCCCUGCACACCUCUCUCUCUCUCUCUCUCUCUCUGUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015773746.1	ncRNA:21   CGGUCCCUUCUCCGUCACGUC   1   *|||||||||||||||||||| targets:85   CCCAGGGAAGAGGCAGUGCAG   105 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group chemocyanin (LOC4332309), mRNA	chemocyanin(LOC4332309)	coding protein	psRNATarget
AK107381.1	ncRNA:21   CGGUCCCUUCUCCGUCACGUC   1   *|||||||||||||||||||| targets:85   CCCAGGGAAGAGGCAGUGCAG   105 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:002-127-C02, full insert sequence	NA	coding protein	psRNATarget
BT130945.1	ncRNA:21   CGGUCCCUUCUCCGUCACGUC   1   *|||||||||||||||||||| targets:84   CCCAGGGAAGAGGCAGUGCAG   104 Target Full Sequence	0.0	Oryza sativa clone RRlibC00092 mRNA sequence	NA	coding protein	psRNATarget
XM_015786539.1	ncRNA:21   CGGUCCCUUCUCCGUCACGUC   1   |||=||||||||||||||||* targets:89   GCCGGGGAAGAGGCAGUGCAA   109 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group basic blue protein-like (LOC107277353), mRNA	basic blue protein-like(LOC107277353)	coding protein	psRNATarget
XM_015770470.1	ncRNA:21   CGGUCCCUUCUCCGUCACGUC   1   |||=*|||||||||||||||| targets:1379   GCCGAGGAAGAGGCAGUGCAG   1399 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group multicopper oxidase LPR1 (LOC4326010), mRNA	multicopper oxidase LPR1(LOC4326010)	coding protein	psRNATarget
CT831519.1	ncRNA:21   CGGUCCCUUCUCCGUCACGUC   1   |||=*|||||||||||||||| targets:1369   GCCGAGGAAGAGGCAGUGCAG   1389 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI217J02, full insert sequence	NA	coding protein	psRNATarget
CT831521.1	ncRNA:21   CGGUCCCUUCUCCGUCACGUC   1   |||=*|||||||||||||||| targets:1378   GCCGAGGAAGAGGCAGUGCAG   1398 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI237F19, full insert sequence	NA	coding protein	psRNATarget
CT831522.1	ncRNA:21   CGGUCCCUUCUCCGUCACGUC   1   |||=*|||||||||||||||| targets:1378   GCCGAGGAAGAGGCAGUGCAG   1398 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI243D07, full insert sequence	NA	coding protein	psRNATarget
CT831520.1	ncRNA:21   CGGUCCCUUCUCCGUCACGUC   1   |||=*|||||||||||||||| targets:1369   GCCGAGGAAGAGGCAGUGCAG   1389 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI223L14, full insert sequence	NA	coding protein	psRNATarget
AK106990.1	ncRNA:21   CGGUCCCUUCUCCGUCACGUC   1   |||=*|||||||||||||||| targets:1310   GCCGAGGAAGAGGCAGUGCAG   1330 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-120-A08, full insert sequence	NA	coding protein	psRNATarget
AK105053.1	ncRNA:21   CGGUCCCUUCUCCGUCACGUC   1   ||||||**||||||||||||* targets:650   GCCAGGAUAGAGGCAGUGCAU   670 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:001-042-E06, full insert sequence	NA	coding protein	psRNATarget
AK066830.1	ncRNA:21   CGGUCCCUUCUCCGUCACGUC   1   ||||||**||||||||||||* targets:1144   GCCAGGAUAGAGGCAGUGCAU   1164 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013075I22, full insert sequence	NA	coding protein	psRNATarget
CT829703.1	ncRNA:21   CGGUCCCUUCUCCGUCACGUC   1   ||||||**||||||||||||* targets:1140   GCCAGGAUAGAGGCAGUGCAU   1160 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA108E09, full insert sequence	NA	coding protein	psRNATarget
XM_015795099.1	ncRNA:21   CGGUCCCUUCUCCGUCACGUC   1   ||||||**||||||||||||* targets:674   GCCAGGAUAGAGGCAGUGCAU   694 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group blue copper protein (LOC4345861), mRNA	blue copper protein(LOC4345861)	coding protein	psRNATarget
AK060044.1	ncRNA:21   CGGUCCCUUCUCCGUCACGUC   1   ||||||**||||||||||||* targets:654   GCCAGGAUAGAGGCAGUGCAU   674 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:006-304-F05, full insert sequence	NA	coding protein	psRNATarget
CT830367.1	ncRNA:21   CGGUCCCUUCUCCGUCACGUC   1   ||||||**||||||||||||* targets:654   GCCAGGAUAGAGGCAGUGCAU   674 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA013P07, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:15258262 "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis"; Sunkar R, Zhu JK; Plant Cell. 16:2001-2019(2004).
2	PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors"; Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y; PLoS Pathog. 7:e1002176(2011).