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BaseInfo

ncRNA ID osa-miR7695-3p
Species Oryza sativa
Class miRNA
Genome position Chr1:11666716-11667202 [-]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 137 - ACGUGAUGUGCCACGUAGGCA - 157
Stem-loop(if miRNA)                     C         A                 AG                 C                                     C     C       A                               C      A                                                   CACCACUGC  CAACCCCUCCCCUCGUUCCGCCUCU
GAGUAAAAUGCACUAGCGGU CUUAAACUU UCGGGAGGUUUCACUUA  UCCACGAACUUGCAAAG GCACAUCGAGGUCUCUAAACUUGGUUUAUUGUAUCAU CCGGU CAAAGCC CGUUUGAUUGUGGUCUUGCCUAUGUGGCACG CACGUG AUGAUGACAUGGAAUUUUUUUUAUUUUUUUCUCCCUUCUUCCUUCUUUUUU         GA                         C
|||||||||||||||||||| ||||||||| |||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||         ||                         A
CUCAUUUUAUGUGGUCGCCA GAAUUUGAA AGUCCUCCAAAGUGAAU  AGGUGCUUGAACGUUUC CGUGUAGCUCUAGGGAUUUGAACCAAAUAAUAUAGUA GGCCA GUUUCGG GUAAACUGACACCAGAACGGAUGCACCGUGU GUGCAC UAUUACUGUACCUUAAAAAAAAUAAAAAAAGAGGGAAGAAGGAAGAAAAAA         GA                         C
                    A         C                 CU                 A                                     A     A       C                               A      C                                                   --------A  GAAAGAAGGAAGAAAAAAGAGCCAC
Stem-loop sequence GAGUAAAAUGCACUAGCGGUCCUUAAACUUAUCGGGAGGUUUCACUUAAGUCCACGAACUUGCAAAGCGCACAUCGAGGUCUCUAAACUUGGUUUAUUGUAUCAUCCCGGUCCAAAGCCACGUUUGAUUGUGGUCUUGCCUAUGUGGCACGCCACGUGAAUGAUGACAUGGAAUUUUUUUUAUUUUUUUCUCCCUUCUUCCUUCUUUUUUCACCACUGCGACAACCCCUCCCCUCGUUCCGCCUCUCACCACCGAGAAAAAAGAAGGAAGAAAGAGAAAAAAAGAAGGAAGAAGGGAGAAAAAAAUAAAAAAAAUUCCAUGUCAUUAUCCACGUGAUGUGCCACGUAGGCAAGACCACAGUCAAAUGCGGCUUUGAACCGGAAUGAUAUAAUAAACCAAGUUUAGGGAUCUCGAUGUGCACUUUGCAAGUUCGUGGAUCUAAGUGAAACCUCCUGACAAGUUUAAGAACCGCUGGUGUAUUUUACUC

Reference

1 PMID:23627500
"Identification of a novel microRNA (miRNA) from rice that targets an alternatively spliced transcript of the Nramp6 (Natural resistance-associated macrophage protein 6) gene involved in pathogen resistance";
Campo S, Peris-Peris C, Sire C, Moreno AB, Donaire L, Zytnicki M, Notredame C, Llave C, San Segundo B;
New Phytol. 199:212-227(2013).