ncRNA ID | osa-miR7695-3p |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr1:11666716-11667202 [-] |
Reference genome | MSU7 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 137 - ACGUGAUGUGCCACGUAGGCA - 157 |
Stem-loop(if miRNA) |
                    C         A                 AG                 C                                     C     C       A                               C      A                                                   CACCACUGC  CAACCCCUCCCCUCGUUCCGCCUCU GAGUAAAAUGCACUAGCGGU CUUAAACUU UCGGGAGGUUUCACUUA  UCCACGAACUUGCAAAG GCACAUCGAGGUCUCUAAACUUGGUUUAUUGUAUCAU CCGGU CAAAGCC CGUUUGAUUGUGGUCUUGCCUAUGUGGCACG CACGUG AUGAUGACAUGGAAUUUUUUUUAUUUUUUUCUCCCUUCUUCCUUCUUUUUU         GA                         C |||||||||||||||||||| ||||||||| |||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||         ||                         A CUCAUUUUAUGUGGUCGCCA GAAUUUGAA AGUCCUCCAAAGUGAAU  AGGUGCUUGAACGUUUC CGUGUAGCUCUAGGGAUUUGAACCAAAUAAUAUAGUA GGCCA GUUUCGG GUAAACUGACACCAGAACGGAUGCACCGUGU GUGCAC UAUUACUGUACCUUAAAAAAAAUAAAAAAAGAGGGAAGAAGGAAGAAAAAA         GA                         C                     A         C                 CU                 A                                     A     A       C                               A      C                                                   --------A  GAAAGAAGGAAGAAAAAAGAGCCAC |
Stem-loop sequence | GAGUAAAAUGCACUAGCGGUCCUUAAACUUAUCGGGAGGUUUCACUUAAGUCCACGAACUUGCAAAGCGCACAUCGAGGUCUCUAAACUUGGUUUAUUGUAUCAUCCCGGUCCAAAGCCACGUUUGAUUGUGGUCUUGCCUAUGUGGCACGCCACGUGAAUGAUGACAUGGAAUUUUUUUUAUUUUUUUCUCCCUUCUUCCUUCUUUUUUCACCACUGCGACAACCCCUCCCCUCGUUCCGCCUCUCACCACCGAGAAAAAAGAAGGAAGAAAGAGAAAAAAAGAAGGAAGAAGGGAGAAAAAAAUAAAAAAAAUUCCAUGUCAUUAUCCACGUGAUGUGCCACGUAGGCAAGACCACAGUCAAAUGCGGCUUUGAACCGGAAUGAUAUAAUAAACCAAGUUUAGGGAUCUCGAUGUGCACUUUGCAAGUUCGUGGAUCUAAGUGAAACCUCCUGACAAGUUUAAGAACCGCUGGUGUAUUUUACUC |
1 | PMID:23627500
"Identification of a novel microRNA (miRNA) from rice that targets an alternatively spliced transcript of the Nramp6 (Natural resistance-associated macrophage protein 6) gene involved in pathogen resistance"; Campo S, Peris-Peris C, Sire C, Moreno AB, Donaire L, Zytnicki M, Notredame C, Llave C, San Segundo B; New Phytol. 199:212-227(2013). |